Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02855 ATGAATCGTGGACCGTCCTTGGCCCAAACCATATATGTCACCGACGCTAGTGGCTTCATCGCCTCTTGGACGGTCAAACTCCTCTTGGAAAAAGAATACACTGTAAGAAAAACCATCAGAAATCCAAAAGATCCCAACAATGGGCATTTGAAAGAGTTGGAAGGAGCCTCCAAGAGGTTAACTCTACATAAGGTTGATCTCCTTGATCTTCAATCTGTTCAAGCAGCTATTCAAGGCTGTGATAGTGTCTTTCACACCGCTTCTCCCGTCACTGATAACCTTGTGAGTTTTATTTTTCTCTCCTTGCTTTCTTTTTCATTTTTTCTATGCGTGTCTGAGTGA 342 0.4269 MNRGPSLAQTIYVTDASGFIASWTVKLLLEKEYTVRKTIRNPKDPNNGHLKELEGASKRLTLHKVDLLDLQSVQAAIQGCDSVFHTASPVTDNLVSFIFLSLLSFSFFLCVSE. 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02855 113 Gene3D - 8 99 - -
Seca5g02855 113 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 10 94 - -
Seca5g02855 113 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 93 IPR036291 -
Seca5g02855 113 Pfam GDP-mannose 4,6 dehydratase 13 87 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02855 Seca-Chr5 82194505 82194846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02855 8 93 Monolignol Biosynthesis Gene Families AT1G80820 62.791 2.62e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02855 K09753 - gmx:100796771 133.265