LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g02854	ATGATGAAAATGGTTCTATCAAGGAGGCTACAGGGTTACTCAAAGATGGATAAGGAAGACCCAGAAGAGAGAATGCATAGAAAAGCACAATTCTTAATCTACAGAGTATTAGAGAAAGCAGATTCTCATGGAAAGCCATCATGTGTCAGGATCAGAATTTTCAAGCTGAAGATTAAGATAGGATCTGTGCGTGCCAAAAATGCCATGAACATAATGCTCACCAACGTGGTTGATGCTGTGGTAGGTAGCATTTCCTTCTACCTTTTTGGTTTTGCATTTGCCTATGGCAATTCCAACCCTTTCATTGGTACCGATTTCTTTGCTTTAGCTAAGATTCCAAATGGCACTTATGACTATAGTTTCTTCCTTTACCAATGGGCTTTTGCTATAGCAGTAGGTGGCATCACTAGTGGGTCTATAGCTGAGAGAACCCAATTCTGTGCCTATCTTGTTTTTTCATTTTTCCTTACTGGGTTTGTCTACCCAGTTGTGGTCCATTGGGTCTGGTCATCCACTGGTTGGCTTAGTCCCAGTTCTAGTGACTTGTTCCTGGGCTCAGGTGCCATTGACTTTGCAGGTAGTGGAGTGGTGCATTTGGTTGGTGCAATTGCTGGGCTTTGGGGATCTATCATAGAAGGCCCACGGGTTGGCCGGTTTGATGCTTATGGCAAGCCCATACCTCTCCGTGGCCACAATGCAACACTTGTGGTGCTAGGAACTTTTTTGTTGTGGTTTGGTTGGTTCGGGTTTAATCCGGGTTCGTTTGACCGGATCGTCGTGGCTTACCCTAGTACATCCGATGAAGGTAATTGGACTTCTGTGGGTCGAACCGCCTTGACAACTACGTTAGCAGGCTCAACCGCCGGGCTTGTCACCTTGTTCGGTCGCCGGTTGTTGATAGGTCATTGGGATGCAATGGATGTTTGCAATGGCTTGCTTGGTGGGTTTGTTGCCATCACCTCTGGGTGTTCAGTTGTAGAGCCATGGACTGCCATTGTTTGCGGGTTCATCTCAGCATGGGTCTTGATTGGGCTCAACATCTTAGCACTAAAATTGAACTATGATGACCCATTAGAGGCAGCCCAATTGCATGGTGGGTGTGGGATTTGGGGTTTGTTGTTTACAGGGCTGTTTGCTAAAGAGGAGTTTGTGATTCAAGCCTATAATTCAGGGGTGGCAGTGAAAAGACCTTATGGGCTTTTACTTGGAGGTGGATGGGGTTTGATTGGAGCCCAAGTGGTTGAGATTTTGGTAATTGTTGGATGGGTTAGTGCAACAATGGGCCCTATGTTCTACGCCTTGCACAAGCTTAATATACTGAGAATTCCTAGGGATGATGAACTTGCTGGCCTTGATATCTCAACCCATGGAGGCTATGCTTATGCTCCTCAAGAGGATCATTATCCACGATCTTATGGAGATTATATGCATATCCAGGATGACCAATCATAG	1452	0.4566	MMKMVLSRRLQGYSKMDKEDPEERMHRKAQFLIYRVLEKADSHGKPSCVRIRIFKLKIKIGSVRAKNAMNIMLTNVVDAVVGSISFYLFGFAFAYGNSNPFIGTDFFALAKIPNGTYDYSFFLYQWAFAIAVGGITSGSIAERTQFCAYLVFSFFLTGFVYPVVVHWVWSSTGWLSPSSSDLFLGSGAIDFAGSGVVHLVGAIAGLWGSIIEGPRVGRFDAYGKPIPLRGHNATLVVLGTFLLWFGWFGFNPGSFDRIVVAYPSTSDEGNWTSVGRTALTTTLAGSTAGLVTLFGRRLLIGHWDAMDVCNGLLGGFVAITSGCSVVEPWTAIVCGFISAWVLIGLNILALKLNYDDPLEAAQLHGGCGIWGLLFTGLFAKEEFVIQAYNSGVAVKRPYGLLLGGGWGLIGAQVVEILVIVGWVSATMGPMFYALHKLNILRIPRDDELAGLDISTHGGYAYAPQEDHYPRSYGDYMHIQDDQS.	484

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g02854	483	PANTHER	AMMONIUM TRANSPORTER	60	457	-	-
	Seca5g02854	483	Gene3D	Ammonium transporter AmtB like domains	56	473	IPR029020	-
	Seca5g02854	483	Pfam	Ammonium Transporter Family	59	461	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Seca5g02854	483	SUPERFAMILY	Ammonium transporter	60	442	-	-
	Seca5g02854	483	NCBIfam	ammonium transporter	60	461	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Seca5g02854	483	ProSitePatterns	Ammonium transporters signature.	190	215	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Seca5g02854	483	FunFam	Ammonium transporter	53	474	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g02854	Seca-Chr5	82188680	82192665	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g02854	61	466	Inorganic Solute Cotransporters	AT1G64780	67.312	0.0	560

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g02854	K03320		-	pvy:116129597	723.005