Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02846 ATGTCGAGGATATGTGTTAAGAATCTCCCAATATATGTTGTGGAGGATCGACTGAGAGAATTATTTTCTCATAAAGGGGAAATCACTGACGTCAACCTTATGCGTACCAAAGATGGCAGGAGTCGCCAACTTGCGTTTATTGGTTTTAGTACAGACAGTGAAGCTCAGGAAGCTATTCAATATTTCAATAAATCTTATCTCGACACATCTAAAATTATTTGTGAGGTGGCTCAAGGACTTGGTGATACAAATCTTCCTCGTCCTTGGAGTCGATATTCTAAAAATAAAGAAAATGAAGTGACCACGCCAGATGCAAACAAGCATGCTAGAACTAAAGGACAAGGAGGCAAGTCTAAGGACATTGTTGATATTAATGACGCACAACTTCAAGATTTTCTTCAGGTAATGGAACCTCGAACTAGAGGTAAACTGTGGGCAAATGATACATGGATTGTATCGAATGTTGGCAACAACCAAGGAGTATCAAATAAGGATAGTAAAGGCACATCAGATTCAAGTGAAGATACTTGTGGAAAGGGTGTTACCAATGATAAAGCTCAAGTGAAGCAAGAGGGGCAATCATCAAATCCTGAAGATGAGAAAGGAGTTTTTGAGTCTTCTCGACTGTTTGTCCGTAATCTGCCATATACAACCACTGTGGAAGAACTGCAAAATCATGTTGAGGAAGAATTGCAAAAGCATTTCAGTAAGTTAAAACGTGTCACAGAGGTTCATCTAGTTGTTGATAAAAATACAAAACAACCTAAAGGAATAGCATATATTCATTTTTCAGATCCAGAATTTGCAGCCAGGGCGCTTAAAATGTTAGATGGTTCAATCTTTCAAGGAAGATTGTTGCATGTTATGCCAGCCATACAAAGGCCTTCAAACAATAAAGATAACAATGTCTCAAAGAACAAAAAGTCTCAAACTTTCAAGCAACACAGAGAGGAAAAGAGGAAAGCAGCTGAAGCTACCGGAGATACTAAAGCATGGAATAGTTTGTTCATGCGCCGTGATACAATTATGGAATACATTGCTCGGAAATATGATGTCAGTAAAAGTGATTTACTTGACCGAGAAGCTGATGATCTTGCGGTGCGCATTGCTCTGGGAGAAACTCAAGTGATTTTAGAGACAAAAAAGGCACTTACTAACGTCGGAGTGAATGTGGAGTCTTTGGAGGAACTTGCTAATGTTAAAGGTGATGGTGTGAAAAGAAGTAATCACGTGCTTTTAGTGAAGAACTTGCCCTTTACTTCGACAGAAAAAGAACTTGCAAGGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCTATTCTCAAATTTGATGATGTGTTTTAACATGCCTATGTTTTTTTTGTATATTTGA 1383 0.3811 MSRICVKNLPIYVVEDRLRELFSHKGEITDVNLMRTKDGRSRQLAFIGFSTDSEAQEAIQYFNKSYLDTSKIICEVAQGLGDTNLPRPWSRYSKNKENEVTTPDANKHARTKGQGGKSKDIVDINDAQLQDFLQVMEPRTRGKLWANDTWIVSNVGNNQGVSNKDSKGTSDSSEDTCGKGVTNDKAQVKQEGQSSNPEDEKGVFESSRLFVRNLPYTTTVEELQNHVEEELQKHFSKLKRVTEVHLVVDKNTKQPKGIAYIHFSDPEFAARALKMLDGSIFQGRLLHVMPAIQRPSNNKDNNVSKNKKSQTFKQHREEKRKAAEATGDTKAWNSLFMRRDTIMEYIARKYDVSKSDLLDREADDLAVRIALGETQVILETKKALTNVGVNVESLEELANVKGDGVKRSNHVLLVKNLPFTSTEKELARMFGKFGSLDKIILPLFSNLMMCFNMPMFFLYI. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02846 460 SMART rrm1_1 3 75 IPR000504 GO:0003723
Seca5g02846 460 SMART rrm1_1 208 289 IPR000504 GO:0003723
Seca5g02846 460 SMART rrm2_1 208 289 IPR003954 GO:0003676
Seca5g02846 460 SMART rrm2_1 3 75 IPR003954 GO:0003676
Seca5g02846 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 293 IPR000504 GO:0003723
Seca5g02846 460 MobiDBLite consensus disorder prediction 155 204 - -
Seca5g02846 460 SUPERFAMILY RNA-binding domain, RBD 206 444 IPR035979 GO:0003676
Seca5g02846 460 MobiDBLite consensus disorder prediction 85 121 - -
Seca5g02846 460 MobiDBLite consensus disorder prediction 294 308 - -
Seca5g02846 460 CDD RRM1_MRD1 2 77 - -
Seca5g02846 460 MobiDBLite consensus disorder prediction 155 180 - -
Seca5g02846 460 SUPERFAMILY RNA-binding domain, RBD 3 227 IPR035979 GO:0003676
Seca5g02846 460 MobiDBLite consensus disorder prediction 310 325 - -
Seca5g02846 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Seca5g02846 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 287 IPR000504 GO:0003723
Seca5g02846 460 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 208 313 - -
Seca5g02846 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Seca5g02846 460 Gene3D - 403 453 IPR012677 -
Seca5g02846 460 MobiDBLite consensus disorder prediction 92 119 - -
Seca5g02846 460 MobiDBLite consensus disorder prediction 293 325 - -
Seca5g02846 460 FunFam RNA-binding motif protein 19 1 100 - -
Seca5g02846 460 Gene3D - 1 123 IPR012677 -
Seca5g02846 460 Gene3D - 154 308 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02846 Seca-Chr5 82038417 82044425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02846 1 78 Eukaryotic Initiation Factors Gene Family AT2G36660 35.897 2.36e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02846 K14787 - han:110937446 431.024