Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02845 ATGGAGAAATATTCCATAGAATATTTTGCAGATGCAGATCAGTTGAAATTGTTGAAATTAGTTGCTGCTAAAATATGCATAATTTGTTTTCTTATTAATTATTCTATGATGCTTCAGGCCAGGACCCTGTTTGTCAAGAACCTAAATTTCAAGACAACGGATGAGTGTTTGAGGAAACATTTTAGTGAACACATGAAAGAGGGAAGAATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAATATGTTTCTTCGGGGTATGGATTTGTTGAGTTTGACTCCACAGAGATTGCTACAAATGTTTGTAGTGATTTACAGGGTACTGATTTGGACGGACTTGCTCTTAGATTACAACTCTGTCGTGTCAAGAATGATGGACACGTACCAATGACTGTTGAAAAGGGTTACAGTTCAACAAAATTGCTCATAAAAAATGTTCCTTTTGAGGCAACGAAGAAGGATCTAAAAGATTTGTTATGCGCCTTTGGCAAGATTAAATGCCTCAGGTTGCCAAGGAAGTTTGGAGGTAGTAGAGGCTTTGCTTTCGTAGAGTATGTTACTCAGCAGGAGACACAAAATGCTCTTAAAGCACTTTTTAACATCCACTTTCTTGAAAGGCATCTGGTGATAGAGAGAGCAAAAGAAGCTGAGAGTTTGGATGAACTGCGGGCTCGAACAGCTGCTCAATTTAGTAAAGATAATGGATTTCAAAATGCTACTAAGTTATGCAAGAAAAGGAAGCACATAAGTATCTTAGATGAAGAAAACATGTAG 780 0.3718 MEKYSIEYFADADQLKLLKLVAAKICIICFLINYSMMLQARTLFVKNLNFKTTDECLRKHFSEHMKEGRILSVKVKKHLKNGKYVSSGYGFVEFDSTEIATNVCSDLQGTDLDGLALRLQLCRVKNDGHVPMTVEKGYSSTKLLIKNVPFEATKKDLKDLLCAFGKIKCLRLPRKFGGSRGFAFVEYVTQQETQNALKALFNIHFLERHLVIERAKEAESLDELRARTAAQFSKDNGFQNATKLCKKRKHISILDEENM. 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02845 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 124 IPR000504 GO:0003723
Seca5g02845 259 Gene3D - 35 135 IPR012677 -
Seca5g02845 259 PANTHER RNA BINDING PROTEIN 68 238 - -
Seca5g02845 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 205 IPR000504 GO:0003723
Seca5g02845 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 117 IPR000504 GO:0003723
Seca5g02845 259 SUPERFAMILY RNA-binding domain, RBD 40 217 IPR035979 GO:0003676
Seca5g02845 259 Gene3D - 136 241 IPR012677 -
Seca5g02845 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 217 IPR000504 GO:0003723
Seca5g02845 259 CDD RRM6_RBM19_RRM5_MRD1 141 215 - -
Seca5g02845 259 SMART rrm1_1 42 120 IPR000504 GO:0003723
Seca5g02845 259 SMART rrm1_1 142 213 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02845 Seca-Chr5 82030568 82032309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02845 43 234 Eukaryotic Initiation Factors Gene Family AT4G34110 29.756 2.36e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02845 K14787 - gmx:100796243 308.531