Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02842 ATGGATCCTATTTCTGAACATAGTGATGCTGAAGACTGTGGGTTGGACAATGAAAATGTTCATGTAGAAGATGAGAAATGTTTTGAAAGTGTTCTTATTGAAATGGGTTTTGATAGTGACCAAGATTTCGTGAATATTGATCATGTGTACCTAACCAAGGATCTTGTGATGACATTTCACTTTTCTGACCTTGAAATTGCCTATGAGTTTTACAATTGGTATGGAAGGATGAAAGGATTCTCTGCTCGCAAAAGCAAAGTGCGAAAAAACAAGAATAAAGTAATAGTGGAGAAGACTTTTCTTTGTCATAGGGAAGGCTTTAGGGGGAAAAAAGACGATGATGATGATGATGATGATGATGATGATGATGATGATGATGTGGAAGACTCCAATGCAGTAGTCCGTGAACCAAGTTCAGAAACAAGAACGAGGTGTCTTGCAAAAATGAAAGTACGTCTTGGTGGACAAACTGGGCGCTGGCATTCTGGGGGTTTCGAAAATATTGGATTCTCAAAAAGAGATGTTTATAACAGAATTCAGACACAACGATTAAAGAATCCATCAGATGTCAAAGGTGCATTACAATACCTTCGCTCATTAGCATCTAATGATATATCCATGTTTTGGAAGCACACAATTGATAATGATGGTAGACTACAAAGATTGATTTGGTGTGATGGGCATAGTCAACTAGATTATAAATTGTTTGGAGATGTCTTAGCATTTGATGCTACCTACAAAACAAATAAGTATCATTTCCCATTGGTGGTTTTTTCTGGTATTAACCACCACAACCAAACAACTATCTTTGCAAGCGCTTTTGTTGCAGATGAAACTGAAGAAACATATGTTTGGTTGCTTGATCAGTTGATGGTAGCAATGAAAGGGAAAACGCCTCTGTCAGTTATTACGGATGGGGGTCTTGCGATGAGAAATGCCATTAAGAGAGTCCTTCCAAATGCACTCCATAGGCTGTGTGCATGA 984 0.3811 MDPISEHSDAEDCGLDNENVHVEDEKCFESVLIEMGFDSDQDFVNIDHVYLTKDLVMTFHFSDLEIAYEFYNWYGRMKGFSARKSKVRKNKNKVIVEKTFLCHREGFRGKKDDDDDDDDDDDDDDDVEDSNAVVREPSSETRTRCLAKMKVRLGGQTGRWHSGGFENIGFSKRDVYNRIQTQRLKNPSDVKGALQYLRSLASNDISMFWKHTIDNDGRLQRLIWCDGHSQLDYKLFGDVLAFDATYKTNKYHFPLVVFSGINHHNQTTIFASAFVADETEETYVWLLDQLMVAMKGKTPLSVITDGGLAMRNAIKRVLPNALHRLCA. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02842 327 Pfam MULE transposase domain 239 326 IPR018289 -
Seca5g02842 327 MobiDBLite consensus disorder prediction 112 130 - -
Seca5g02842 327 MobiDBLite consensus disorder prediction 110 141 - -
Seca5g02842 327 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 58 326 IPR031052 GO:0006355
Seca5g02842 327 Pfam FAR1 DNA-binding domain 69 162 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02842 Seca-Chr5 82007692 82008842 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g02842 FAR1 1.1e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02842 - - tpra:123886262 268.855