Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02837 ATGTTTGTTGGTGTTGATGCATTTCAGAGGATTTATGGTGAGACAAAGGATAAATTCATTGCTCGCAAGTTGTTCAATAAAATTCCCCAACGAAGTGTCGATGCTTGGAACTCTATGATCTCGGGTTATAAGCGAAACCGGTTTGCCAATGAAGCAATTGAGTTGTTTCACAAGATGTGTGAATCTGGTTTTGTCTCTGATCCCGCAACTATTGTTAGTGTTTCTTCTGCTTGTTCTCAACTGGGTTCTAAGTGCCCCTTTGTTGGGATTGACATCTTCACTGCCAAGAAGCTTGAAGGTATTGTGCCCTCTTCTCACAACTATGATGTTCCCCATGTGAATCGTACTGACTACCAGCTCATTGATATTTCTAAGGATGGATTTGTTAGTTTTCTTATTGAAAATGGCTTGGCTGGATTTGTTACTGCAATCAACCAAGCTTCTCTTCCTCCCAGTGTCTTTAGTCGCAGCTCATTCTCATTTCGCTCTATCTCCCAGATGGAAACTCCAATGGAATTTTGGGGTGTTGAGGTTAAGGTTGTGCAATCTGTTAAAGTAGACCCAACGGATGAATTGATTGGATACATACACATTTCTCAGGTTGCACTTGGGGAGGCAAAGAAAGGCAAAACAAATGAATATGATGTTTTGTACTTGAAAGTTGATGACCAGAAGTTTGTTTTGGGAACTCTTACTAGGGATGATATCCCCCAACTATCTATGGATTTAGTTCTGGACAAGTTTTCTGAGCTTTCACACAATTCAAGAAATGCTCATTACGTGCGTGGCCTTTGGCCTTCAACTATTTTCACTCAAGAGCTTCAAGAAAAGAGGTTGATGCACAATCTTCATCAGTATGAGGTTCCTCTGCATAGGTACATGGCCATGATGGATCTTCAAGAGAGGAATGAAAGGTTGTTTTATAAGCTTCTGATTGATAATGTTGAGGAACTTCTTCCTATTGTTTATACTCCAACGGTTGGAGAAGCCTGCCAGAAATATGGAAGCATTTTCAGGCGTCCTCAGGGTCTATATATCAGTTTAAAGAAGAAAGGTAAGATTCTTGAAGTGCTAAAAAACTGGCCAGAAAAACTATTCAAGTTACTGTTGTGA 1113 0.4016 MFVGVDAFQRIYGETKDKFIARKLFNKIPQRSVDAWNSMISGYKRNRFANEAIELFHKMCESGFVSDPATIVSVSSACSQLGSKCPFVGIDIFTAKKLEGIVPSSHNYDVPHVNRTDYQLIDISKDGFVSFLIENGLAGFVTAINQASLPPSVFSRSSFSFRSISQMETPMEFWGVEVKVVQSVKVDPTDELIGYIHISQVALGEAKKGKTNEYDVLYLKVDDQKFVLGTLTRDDIPQLSMDLVLDKFSELSHNSRNAHYVRGLWPSTIFTQELQEKRLMHNLHQYEVPLHRYMAMMDLQERNERLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIFRRPQGLYISLKKKGKILEVLKNWPEKLFKLLL. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02837 370 SMART malic_2 300 367 IPR012301 GO:0004471
Seca5g02837 370 Pfam PPR repeat 35 64 IPR002885 -
Seca5g02837 370 Pfam Malic enzyme, N-terminal domain 300 366 IPR012301 GO:0004471
Seca5g02837 370 Gene3D Tetratricopeptide repeat domain 6 110 IPR011990 GO:0005515
Seca5g02837 370 PANTHER MALIC ENZYME-RELATED 237 366 - -
Seca5g02837 370 NCBIfam pentatricopeptide repeat 35 67 IPR002885 -
Seca5g02837 370 SUPERFAMILY Translation proteins SH3-like domain 68 120 IPR008991 -
Seca5g02837 370 Gene3D - 238 370 IPR037062 GO:0004471
Seca5g02837 370 Pfam Nucleoplasmin-like domain 173 259 IPR041232 -
Seca5g02837 370 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 112 136 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Seca5g02837 370 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 32 66 IPR002885 -
Seca5g02837 370 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 244 364 IPR046346 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02837 Seca-Chr5 81988960 81990072 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02837 68 136 Eukaryotic Initiation Factors Gene Family AT1G13950 67.123 5.15e-25 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02837 K00029 - gmx:100818219 210.69