Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02821 ATGTGCAGTGGTTCCAAGAGGAAACCCTCTCAACTTGGTTTGATTATGGAGGATGAGTATGGAAGATCAGAAGGAATGCATCATAAATTTTCTGCTTTGCTTGAGTTTTCAGCTACAGATGATGTAATGGCTCTCAAGTATGCAGTTGAAAAGGAGGGTCATGATGTTGATGAGGTGGGGTTGTGGTATGGAAGGAGGGTTGGCTCAAAGGAAATGGGTTATGAAGAGAGGACCCCTCTTTTGATTGCTGCTATGTTTGGAAGCAAGGGTGTGCTATCTTATATTCTTGGAACAGGTCATGTTGATGTTAACCAGACTCATGGCTCAGATGGTGCTACTGCCCTTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCCCCTGAAGTAATCAAGTTTTTGCTTGATGCTTCTGCAGATGTTAGTATTGTTGATGCCAATGGTAAACGGTCCTGTGACTTGATTGTTTCTGTGTCTAATAGTATTTTCAATTCAAGGAAGAGGATACTACAAGCCATTCTAGAAGTTGACCAAATGGAGAAACAGCAGCAACAAGATGTAGACGTGCCTCCTCGTGTTTCAAAAGATGGGACTGAGAAGAAGGATTATCCTGTTGATCTCTCTCTTCCAGACATAAAGAATGGGATATATAGTACAGATGAGTTTAGGATGTTTACATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCAGGGGAAAATGCAAGGAGGCGTGATCCAAGGAAATATCATTATAGCTGTGTCCCTTGCCCTGAGTTCCGGAAGGGATCCTGCAGTAAGGGGGATACTTGTGAATATGCACATGGTATTTTTGAATGCTGGCTTCACCCTGCTCAGTATCGAACCCGGCTTTGCAAGGATGAGACTGGATGCACCAGAAGAGTTTGCTTCTTTGCTCACAAGCCAGAGGAGCTTCGCCCGTTGTATGCTTCTACTGGTTCTGCTTTGCCTTCTCCCAGATCATATTCAGCTAGTGCTTCTTCATTGGACACTTTTACACTAGGCTCTTCATCTGTCTTGATACCACCTGCCTCAACACCACCTTTGACTCCAACTGGATCATCTTCTCCTGTGGGTGGAACCTTGTGGCAGACTCAATCTCATGCTGCAGTCCCTACCCTTCAGCTGACCGGAAGCAGATTGAAAACTGCATCAAATGCTAGAGATACTGATTTAGACATTGAATTTCTTGGACTTGAAAATCGCAGGCTTATGCAACAGCTAATATGGAATAATTCCAGTCCTAATAGTCCATCTTTTCCTCTCTCTTTGAGTGATCACAATGGGGAGTTAAATAGACTTGCAGGAGTGAAGCCTACTAACCTTGAAGACTATTTTGGGTCTCAGATACAATCTCCAACTGGAATTCAGGTGCTTCAGAATGCTAACCAGCTTCTACACGGCTATCCTTCCAACCTTTCCACTTCAAATGTGATTGGATCGCCATTATTCAGGGTTGATTCATCTGGGACAGCAGCTGCAATGGCATTGAATCCAAGATATGCTGCCTTTTCACAGCGGAGCCAGAGCTTCATTGAGCGTACCGGTGTGAACTGTAATTCTGAGCTTCTTTCTCATGCCACCCCGGTTGCTGTGGAGCCTTCTACCTTCTCTGGTTGGGGCTCCCCTGATGGCAAATTAGACTGGGCCATCCGTGGAGATGAATTGAATAAGTTGAGGAAATCATCTTCTTTTGGATTTCGAAGCAGCAATAGTCCTTTAACAACCACAATGTCACCAGATGTTGATGAACCAGATGTATCTTGGGTTCATTCACTTGTGAAGGATGCTACACCAATGGAATCTGGTCAGTCTGGTGCTGAAGAGCAGATGCAATGGCTTAATGGAACAGATGCAGCTAGGCTGGAGCAATTGTACATGGAGCAGGAGCAGATGGTGGCATGA 1953 0.448 MCSGSKRKPSQLGLIMEDEYGRSEGMHHKFSALLEFSATDDVMALKYAVEKEGHDVDEVGLWYGRRVGSKEMGYEERTPLLIAAMFGSKGVLSYILGTGHVDVNQTHGSDGATALHCAVAGGSAASPEVIKFLLDASADVSIVDANGKRSCDLIVSVSNSIFNSRKRILQAILEVDQMEKQQQQDVDVPPRVSKDGTEKKDYPVDLSLPDIKNGIYSTDEFRMFTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDTCEYAHGIFECWLHPAQYRTRLCKDETGCTRRVCFFAHKPEELRPLYASTGSALPSPRSYSASASSLDTFTLGSSSVLIPPASTPPLTPTGSSSPVGGTLWQTQSHAAVPTLQLTGSRLKTASNARDTDLDIEFLGLENRRLMQQLIWNNSSPNSPSFPLSLSDHNGELNRLAGVKPTNLEDYFGSQIQSPTGIQVLQNANQLLHGYPSNLSTSNVIGSPLFRVDSSGTAAAMALNPRYAAFSQRSQSFIERTGVNCNSELLSHATPVAVEPSTFSGWGSPDGKLDWAIRGDELNKLRKSSSFGFRSSNSPLTTTMSPDVDEPDVSWVHSLVKDATPMESGQSGAEEQMQWLNGTDAARLEQLYMEQEQMVA. 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02821 650 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Seca5g02821 650 SUPERFAMILY Ankyrin repeat 40 155 IPR036770 -
Seca5g02821 650 MobiDBLite consensus disorder prediction 359 378 - -
Seca5g02821 650 Pfam Ankyrin repeats (3 copies) 57 143 IPR002110 GO:0005515
Seca5g02821 650 SMART c3hfinal6 260 286 IPR000571 GO:0046872
Seca5g02821 650 SMART c3hfinal6 295 318 IPR000571 GO:0046872
Seca5g02821 650 Gene3D - 26 184 IPR036770 -
Seca5g02821 650 MobiDBLite consensus disorder prediction 179 199 - -
Seca5g02821 650 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Seca5g02821 650 ProSiteProfiles Zinc finger C3H1-type profile. 265 287 IPR000571 GO:0046872
Seca5g02821 650 SMART ANK_2a 28 58 IPR002110 GO:0005515
Seca5g02821 650 SMART ANK_2a 75 105 IPR002110 GO:0005515
Seca5g02821 650 SMART ANK_2a 110 142 IPR002110 GO:0005515
Seca5g02821 650 PANTHER UNKEMPT FAMILY MEMBER 35 612 IPR045234 -
Seca5g02821 650 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 265 285 IPR000571 GO:0046872
Seca5g02821 650 FunFam Zinc finger CCCH domain-containing protein 66 218 286 - -
Seca5g02821 650 Gene3D - 261 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02821 Seca-Chr5 81735100 81737133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02821 28 619 C2H2 Transcription Factor Family AT5G12850 40.090 2.08e-140 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca5g02821 Ank_2 3.3e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02821 - - aprc:113846970 889.412