Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02818 ATGGGGTCACGTTTGAGAAGCAAAGCTCTCATGACTTTACTCAGCATGGCCAAGGATGAAGAAAGCAGGAAAATAATGCTTGAAGGGGGTATCACAAGACTGGCTGTACATAGTCTTCTTGGGAGTTCTGAGAAAGAGAGAGAGTATGCTGTTAAATTATTACTAGAGTTCTGCACTGATGAAGATTGTTGCATAAGAATTGCTTCAGAGAAAGGTGCTTTAGTTCTTCTCTCAAGTATGACAGGAAATCAAGAGTATCCATCTCTGTCCAATTTATCTGAGGAAGTCTTAAGGCAGATAGAGAGGGTGGAGGATAATGTTCAGCGTTTGGTAGCAGCTGGAAGAATGGAACCATTACTTCTACGGTTACGCGATGGTTCTGATGGTGTAAAGATAGAGATGGCTTCTCTAGTGGGAAGGATGACCTTGACAAATAGCTGTAAAGAACAAATTGCCAGGCAAAGTGCCAGAGTATTTGTTGAACTGCTTTCTAAACAAGAAGGAAGGGGACCAAGTTTGCAAGCATTATATAACTTGTCTCTGTTGGATTACAATGCAACCATCCTTGTTGAGTCTTCAGTCCTTCCATCTCTTATAGAAGTTCTTTTTGATGAACTGAATCCTTCCTATGAGCTGAAGTTATTAGCTGCTTCAACAATCGCAAATATAGTAACTAAGCCAGGGAGTTGGGAATTTGCATCTGCTGACAACAATGGAAATCCAATGCAGTCAGAAAATATTGTGTTCAGACTTTTGGGGCTTTTAAACTGTTCATCCTCTCAGTGTCAAGTGATTGTTCTTCGCATACTTTGTGGAATTACATCATCTCCTCAGGCATCAGAGTTAGCAGCAATTCACATCATGTCCGGGGATGGTTTTAGAATAGTCACACCATTTCTTCAATACCCAGAAGTTGAACATAGAGTGTTTGCTTTCAAGCTTACAAGACTGCTATCTGAATGGCTTAGTCAAGACATTGCAAATGAGCTGAGACTTTCAAACAAACTTAGAATGCTTAAAGAAAAACTGTTAAATAATCAATCTACAAAAGATGAGAAATCAGATGTAGCACAGATACTTGCCAATCTTCCCCTCTTAGAGGATGAAGTACAGACACTTTTAGGAGATGACTTTGTGAAATGGACTGTTGTTACTCTTAAGAATCAGCGGCGTGTTTCCAATTCAAGGTTTTCACATACAGCATCAGGCATGCAGGAAGGCCTTCTAGGTCTCTTGCTTCACTTCACTAGAAACCTTGATCAGCAATCACTTAATGTGGTTAGAGATGATCATCTTATGGCAATTTTCTGTGAGCAGCTGGATTATACTTCAAATCCAAAGGTAAAACGACTTGCTGCTGTTGGATTGAAACACTTATCAGAATTTGGAAAATCAGTTACTGCTAAGGACACTGCAATGCCATCTCCGAGTGGGTTCTGCTCTTCCCTGCTGCTCATGTGTGGGAGAGCCTCTAGTCAACCTTCCACATGTCCCATTCACAATAGCCACTGTGAGGAAGATAGTGAATTGTGCCTGCTCAAGAGCAACTGTATCAAACCCCTGGTTGATATCCTCAGTGACAATGACACTAATGTGCAGCTTGCTGCAGTGGAAGCACTATCTACTCTAGTATTAGATTACACATCTCCCAGTTTCAAAAGAGCTGTTGATGAACTTGAGCAACTGGGTGTGGTTGATTCTTTGGTCACACTTTTTACTGAAGTTAGATCTGAGGAGCTTCAGGAGAAAACAATTTGGATAATAGAGAAGATTTTGAGAGTGGATAATCTAAGCCATCAGCATGCACTTAATCAGTCTCTTGTGAGAGGCTTGGTTGAAGCCATTACTCATGGGAATACCAACACAAAGAAACATGCTCAAGATGCTCTGATCCTCCTAAAGGAGTTATCAGGTGTTAGTGGAAGGGCATCAAGTCAATCTCAAGCTCAGAGATAG 1956 0.41 MGSRLRSKALMTLLSMAKDEESRKIMLEGGITRLAVHSLLGSSEKEREYAVKLLLEFCTDEDCCIRIASEKGALVLLSSMTGNQEYPSLSNLSEEVLRQIERVEDNVQRLVAAGRMEPLLLRLRDGSDGVKIEMASLVGRMTLTNSCKEQIARQSARVFVELLSKQEGRGPSLQALYNLSLLDYNATILVESSVLPSLIEVLFDELNPSYELKLLAASTIANIVTKPGSWEFASADNNGNPMQSENIVFRLLGLLNCSSSQCQVIVLRILCGITSSPQASELAAIHIMSGDGFRIVTPFLQYPEVEHRVFAFKLTRLLSEWLSQDIANELRLSNKLRMLKEKLLNNQSTKDEKSDVAQILANLPLLEDEVQTLLGDDFVKWTVVTLKNQRRVSNSRFSHTASGMQEGLLGLLLHFTRNLDQQSLNVVRDDHLMAIFCEQLDYTSNPKVKRLAAVGLKHLSEFGKSVTAKDTAMPSPSGFCSSLLLMCGRASSQPSTCPIHNSHCEEDSELCLLKSNCIKPLVDILSDNDTNVQLAAVEALSTLVLDYTSPSFKRAVDELEQLGVVDSLVTLFTEVRSEELQEKTIWIIEKILRVDNLSHQHALNQSLVRGLVEAITHGNTNTKKHAQDALILLKELSGVSGRASSQSQAQR. 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02818 651 Coils Coil 93 113 - -
Seca5g02818 651 SMART arm_5 144 181 IPR000225 GO:0005515
Seca5g02818 651 SMART arm_5 420 461 IPR000225 GO:0005515
Seca5g02818 651 SMART arm_5 504 545 IPR000225 GO:0005515
Seca5g02818 651 SMART arm_5 182 225 IPR000225 GO:0005515
Seca5g02818 651 SMART arm_5 552 593 IPR000225 GO:0005515
Seca5g02818 651 SMART arm_5 102 143 IPR000225 GO:0005515
Seca5g02818 651 Gene3D - 3 463 IPR011989 -
Seca5g02818 651 SUPERFAMILY ARM repeat 4 591 IPR016024 -
Seca5g02818 651 SUPERFAMILY ARM repeat 301 544 IPR016024 -
Seca5g02818 651 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 641 - -
Seca5g02818 651 Gene3D - 499 648 IPR011989 -
Seca5g02818 651 Pfam Armadillo/beta-catenin-like repeat 512 543 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02818 Seca-Chr5 81689409 81693555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02818 5 641 U-box Gene Family AT1G76390 27.854 5.01e-55 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02818 - - gmx:102659945 995.727