Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02803 ATGACAACACGGGGTATGGAGAATTCTTGGAGCAGGAATCGTAAAAGAGGGCTCACGCGAAGAAAGCTTCAAATCAATGAAAGGGTGGAGGTGAGGAGTTTAGAGGACGGCTTTCTGGGCTCATGGCATCCGGGGATAGTTATCAATTGTGGGAAGCTGGAGCGCTCTGTCAGATATGATAATCTCTTGCATGATAATGGGTTGGATCATCTTGTGGATGTAGTGAGAGTTTCAAATGCTTTGGATGGGAATACTAGTTACTCAGATGTCAATAAACGTGGGTTGATTAGGCCACTGCCTCCTTTGATTGATTTTGAGAAAAAGGATCTTAAATTTGGTCTGTGTGTTGATGCAAGCCATCAGGAAGCTTGGTGGGAAGGTGTTATATTTGATCACTGTGATGAAATGGAGGAAAGGAACATATTTTTCCCAGATTTGGGTGATGAAATGAAGATTGGAGTTCATCAACTGCGGATTACACAGGACTGGGATGAAGTTACTGAGACGTGGGAGCGAAGAGGGAATTGGGTGTTTCTTGAATTGATTGAAGAGCTAGAGAGGGCATCATATGTTGCAGTTTCAGCAAAGCAAGTTTGGTATGATATACGGGAAAGAAATGATTTTGGCTTGATTGGGGATTGGACATTTAATTTTAAAAACTTTTTGAAAGACATGGTAATGGAGGTAGTTAGTGACTACTGGACTCTTACAGTAAAAGAAGTTTTCTCAGCCTTGGACCTTCCAAGGGATTCATTAAATGAAACAGTGGAATCAGTTAAACTTATGTCTAATGTTGGCTTAAACACAACCTTCCCTGAAAAGGAAATTTTTGAGAAGAAAGAGCGTGTTCTTCCTGTTAGAAAGGAGTTACCTAAGTTTCAGAATAAAATTTCCTGGAATGGTGCTGGCGAAGTGGTTTCAGGTGCTATCTGTTTTGAAAAACATAGGAAAAACAGATCGCCAACTTCTTTAAATTCCAAGTGGATACCTCTGAAATTGTCTGCAGTTGAATTCTGTCCTGATGCTTGTAAGCAATATGCACTTGCTAGTAAAAAGGAGAATAGGGAATTTTGGAAGGATAAAGCAAGACAACATCTTGCATATCTTGGATGGAAAATTGAGTTGCTCGAAGGCAAATCTGGTGCTAAACATTACAGGTACACTTCGCCTGATGAACAGGGCCAGAAGAAGGCTTACTTATCACTCATTGAACTTTGTAGATTTATGCAAAGGGAATCCAACATGACCTCTTCTCTGTCCCAAACTGATGAGAGTATAATGCACCCTACAGTTGATTGTCATCTTTCACATGTGCCTAATCTATCAGAAAAGATTCAGGACCTAGATATTTGTCCTCCAATTGAGCCGCCTCCTACTGTGGCAGTTGTAGATGAGCCAATGTATTGTCCTCAGGCAATGCAAAAGGAATCCAACGTGAACTCTTTGCTGTCCCAAAATGATCAGAATATAATGCATCCTACAGATGACTATCATCCTTCACATGTGCTTCTTAATCCATCAGAAAAGATGCAGCACCCAGATATTTGTCCTCCAATTGAGCAGCCTCCTTCTGTTGCAGTTGCAGATGAACCAGAGTATTGTCCCCAAGCTCTTGTGGAATATTACTCACATGCATTCGTGAAGAACTGGTCTGATAAAAGAAAATGGATATGCAAAGCAAAGAAACATCTGTTAGCAGAAGGATGGATATTTGACTATCCCCCTCCACATAATAAAAAAAGGGGAATTATATACATATCTCCTCAAAGTCGGAGATTCAATACACTCCATGCAGCATGCAGATTTTGTATCGAAGTAGGTATTCCTAAGTGGAGTATTTCTGGCATGGAACCTATAAATGCCTCAGCCATTAATGAGGAAAATGCTGTTCAGGTCTGTAGTGGTGATTTATTACACAGAGTATCTCAACTGCTTCCACAGGAACCTGAGTTACATAATACAGGTGATGGTGCTGTGAATGGATCAACTGCAAATCGTAAGCGGAAACGCCTAAGGAAATCAAAGGCCAGCCTACCTAAGTGCCAAAGCAATGGATTATCTCTACGGGTGTTACGATCAAGTAAAAGGGTGCAAAATGTGTCTGCCCCTTCTCTGGCACACCATAAACCTTTAAATGTTCTGTCTTGGTTGATAGACAGCAACATTATGTTACCAAGATGTAAGGTTTATTATCAGACAAAACACAGGCACCATGCTTTGGCTGAGGGGAAAATAACTCGTGATGGAATCAAGTGTAATTGTTGCATGAAAATATACAGTCTTGCTGGCTTTGAAAAGCATGCTAGCGGCAGTAGTACCCGAAGACCCTCTGCTAGTATCTTTTTGGAAGATGGTAGATCGCTCTTAGATTTCCAGAAACAAATAATGCAAGATTACATGACAAGGGGGACTATGGAAAAACCATTGAGTAATTTGTGTCATGGCGAGAATGACTACCTTTGTTCTGTTTGCCACTATGGTGGTGAACTTATTTTATGTGATCAATGCCCGTCTTCATTTCATAAAACGTGTCTTGGTTTGGAGGATATCCCTGATGGTGACTGGTTTTGTCCATCTTGTTGTTGCCGGATTTGTGGCCAAAGCAAAATCAACGGAGATGAGGATGGGCATTTCCTTACTTGCATTCAGTGTGAACATAAATATCATATTAGGTGCCTGAAAAATAGAGCTGTAGATAGATCAAGAAGATATCTGGAAAATTGGTTCTGTGGAAGAGACTGTGAAAAGATATATGTAGGCCTTCATAAACTATTAGGAGAGCCAGTTTCAGTGGGCGAGAACAATCTAACTTGGACATTGATGAAGTTCATCAACTCTGAGAGTTGTAATCTTGGCAGTACTAAAAGTGACTTATTGGCAGAAAGTTACAGCAAACTCAATGTTGCTCTTTCAATGATGCATGAATGTTTTGAGCCCCTAAGGGAACCTTTCTCTAGCAGAGATCTCATGGAAGATGTTATATTCAGCAGATGGTCAGAACTTAATCGGTTAAACTTCCAAGGTTTCTATACTGTACTTCTGGAGAGAAATGACGAACTGATTAGTGTGGCAACTGTTAGGGTCTTTGGAGAGAAGGTAGCAGAAGTACCTCTTGTTGGTACCAGATTACAGTATCGTCGACTTGGAATGTGTCGCATTTTAATGAATGAACTTGAAAAGAAGCTCATGAAATTAGGAGTGGAGAGGCTTGTTTTGCCTGCTGTTCCAAGCGTCCTAGACACATGGACTGGCTATTTTGGCTTTACAAAGATGACAAATTTTGAAAGATCACAATTTCTGGACCATACTTTCCTAGATTTTCAGGGTACCATCATGTGCCAGAAGTTGTTGATGAAGATTCCGTCTCCAGATTCAGTTTTGTCAATAGGGTTCCAACAAAAACATGATGTTTTCTCTGGAAGTTGTAGTGCTCATTTTGATAAGTCTAGTTCTGTATCTGAAGTATATCAAGCAGGAGAGATTGACAAAGGAGGGATGCTGGATCAACAAATGGGGGATTTAACTATGTTGTTCACAGAATTTATGTTTGGAAGTGACAATGGTGTTGTATCTAACCATTCTGAATTTCTGATATTTTCCAGTGCTAATGAAGGCAACAGTGATCATCCTGGTACTGATGCCATTGAACCTGTCACCGTGGTGAAGCAACTAAGACCTGAGGATCAAGAGTGCCATAATGGAACCTCTTCACAGTTCTCTCTTGTAAAGCCATCTGACAGGTATAATGGCCAATGCTACAAAAGAAGGAAAGTGAGAATGCCATTATGA 3789 0.4051 MTTRGMENSWSRNRKRGLTRRKLQINERVEVRSLEDGFLGSWHPGIVINCGKLERSVRYDNLLHDNGLDHLVDVVRVSNALDGNTSYSDVNKRGLIRPLPPLIDFEKKDLKFGLCVDASHQEAWWEGVIFDHCDEMEERNIFFPDLGDEMKIGVHQLRITQDWDEVTETWERRGNWVFLELIEELERASYVAVSAKQVWYDIRERNDFGLIGDWTFNFKNFLKDMVMEVVSDYWTLTVKEVFSALDLPRDSLNETVESVKLMSNVGLNTTFPEKEIFEKKERVLPVRKELPKFQNKISWNGAGEVVSGAICFEKHRKNRSPTSLNSKWIPLKLSAVEFCPDACKQYALASKKENREFWKDKARQHLAYLGWKIELLEGKSGAKHYRYTSPDEQGQKKAYLSLIELCRFMQRESNMTSSLSQTDESIMHPTVDCHLSHVPNLSEKIQDLDICPPIEPPPTVAVVDEPMYCPQAMQKESNVNSLLSQNDQNIMHPTDDYHPSHVLLNPSEKMQHPDICPPIEQPPSVAVADEPEYCPQALVEYYSHAFVKNWSDKRKWICKAKKHLLAEGWIFDYPPPHNKKRGIIYISPQSRRFNTLHAACRFCIEVGIPKWSISGMEPINASAINEENAVQVCSGDLLHRVSQLLPQEPELHNTGDGAVNGSTANRKRKRLRKSKASLPKCQSNGLSLRVLRSSKRVQNVSAPSLAHHKPLNVLSWLIDSNIMLPRCKVYYQTKHRHHALAEGKITRDGIKCNCCMKIYSLAGFEKHASGSSTRRPSASIFLEDGRSLLDFQKQIMQDYMTRGTMEKPLSNLCHGENDYLCSVCHYGGELILCDQCPSSFHKTCLGLEDIPDGDWFCPSCCCRICGQSKINGDEDGHFLTCIQCEHKYHIRCLKNRAVDRSRRYLENWFCGRDCEKIYVGLHKLLGEPVSVGENNLTWTLMKFINSESCNLGSTKSDLLAESYSKLNVALSMMHECFEPLREPFSSRDLMEDVIFSRWSELNRLNFQGFYTVLLERNDELISVATVRVFGEKVAEVPLVGTRLQYRRLGMCRILMNELEKKLMKLGVERLVLPAVPSVLDTWTGYFGFTKMTNFERSQFLDHTFLDFQGTIMCQKLLMKIPSPDSVLSIGFQQKHDVFSGSCSAHFDKSSSVSEVYQAGEIDKGGMLDQQMGDLTMLFTEFMFGSDNGVVSNHSEFLIFSSANEGNSDHPGTDAIEPVTVVKQLRPEDQECHNGTSSQFSLVKPSDRYNGQCYKRRKVRMPL. 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02803 1262 MobiDBLite consensus disorder prediction 649 681 - -
Seca5g02803 1262 Pfam Tify domain binding domain 743 794 IPR032308 -
Seca5g02803 1262 SUPERFAMILY FYVE/PHD zinc finger 800 860 IPR011011 -
Seca5g02803 1262 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 972 1097 IPR016181 -
Seca5g02803 1262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 813 861 IPR013083 -
Seca5g02803 1262 ProSiteProfiles Zinc finger PHD-type profile. 818 863 IPR019787 -
Seca5g02803 1262 Pfam Agenet domain 27 101 IPR008395 -
Seca5g02803 1262 Pfam PHD-finger 821 862 IPR019787 -
Seca5g02803 1262 Gene3D - 960 1122 - -
Seca5g02803 1262 SMART agenet_At_2 21 104 IPR014002 -
Seca5g02803 1262 SMART agenet_At_2 108 165 IPR014002 -
Seca5g02803 1262 CDD PHD2_CHD_II 821 860 - -
Seca5g02803 1262 CDD Tudor_Agenet_AtDUF_rpt1_3 23 101 - -
Seca5g02803 1262 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 956 1123 IPR000182 GO:0016747
Seca5g02803 1262 PANTHER PHD FINGER PROTEIN 12 514 1160 IPR042163 GO:0003714|GO:0045892
Seca5g02803 1262 CDD NAT_SF 1012 1072 - -
Seca5g02803 1262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 862 917 IPR013083 -
Seca5g02803 1262 SMART PHD_3 862 914 IPR001965 -
Seca5g02803 1262 SMART PHD_3 820 861 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02803 Seca-Chr5 81483869 81495035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02803 32 417 PHD Transcription Factor Family AT5G58610 35.697 7.77e-63 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca5g02803 Agenet 1.7e-13 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02803 - - cam:101498411 1452.96