Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02797 ATGGTGTCGGGTTCAGAAATCGGCGCAAAAAGGATGGACGTTGACACGCGCCACCACATGCTTGGTCATCTCGCTTCCATTATAGCGAAGGAGCTTCTCAATGGACAGGAAGTCAGACTTGCTCGTTTGAAGGTTTATGAGGGAATCCCTCCTCCATATGACAAGATGAAGAAAATGGTTGTCCCTAATGCTCTCAAGGTGTTAAGGCTTCAGAAAGGACACAAGTACTGGCCGAAGTTAGATATGGAACTACGACACCATCAGGGAGCTTAA 273 0.4725 MVSGSEIGAKRMDVDTRHHMLGHLASIIAKELLNGQEVRLARLKVYEGIPPPYDKMKKMVVPNALKVLRLQKGHKYWPKLDMELRHHQGA. 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02797 90 Gene3D Ribosomal protein L13 37 82 IPR036899 GO:0003735|GO:0005840|GO:0006412
Seca5g02797 90 PANTHER RIBOSOMAL PROTEIN L13 39 80 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca5g02797 90 SUPERFAMILY Ribosomal protein L13 14 77 IPR036899 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02797 Seca-Chr5 81331445 81331717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02797 40 76 Cytoplasmic Ribosomal Protein Gene Family AT4G13170 83.784 2.23e-17 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02797 K02872 - gmx:100813340 76.2553