Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02773 ATGCCAACCCAATCAGACTCACCCAGCAAGCCCATGAACAACAACAACACACTGAGTCAAATGTTTCAAAACATATTCTCAGACAACAGTAACATCATGCTTGCAGCTATCATTTCCTTGCTCTTAGTCATCCTCTTTGTTCTGTTACTCCATCTCTATGCTAAATGGTTCTTAGCTCAAGCACATGCACAGGCACAAGCCCGGCGGCGCCGTCGCCGGCGAACCACCGTGACCGTCTCCGATGTCCTTGGTCCTGCCAGGTTCCACCACTTTCACAGCTTCAACATAGAAGACTCACCCCTTTCTAGTTCCCACACCAAAGGGCTTGATTCTGCTATCATTGCTTCTATTCCACTGTTCATCTATGCTGATGATGAACAGAGCAAGGTGGAACATGAGCTTGAATGCGTGATTTGTTTGAGTGCTTTTGAGGATGGTGAAATGGGAAGGTGTTTGCCAAAATGTGGCCATGGTTTTCATGTTGGGTGCATTGACATGTGGTTGAGTTCACATTCCAATTGCCCAATTTGTAGGGCTCCAATTGTAGGTGGTGGGGTTGTTGAGAATGATTCTTCAGCTGTTGGGGATAATGGTTCTGCTTTTGTTGAGATTGTGATTGAGGATACTCCAAGTCCTGAGATTAGAGAGAGTGAACATGGGAATGACAATGGAGGGGTGGTGAGTGATTCTAATTCTATGTCAGAAACCTCATCCTCGTTGTTTGGATGCTCTTTGAAGACAATGCTGAGCAAAGTTTTCCCATCTTCCAATGTAAATGAATAG 783 0.4521 MPTQSDSPSKPMNNNNTLSQMFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLAQAHAQAQARRRRRRRTTVTVSDVLGPARFHHFHSFNIEDSPLSSSHTKGLDSAIIASIPLFIYADDEQSKVEHELECVICLSAFEDGEMGRCLPKCGHGFHVGCIDMWLSSHSNCPICRAPIVGGGVVENDSSAVGDNGSAFVEIVIEDTPSPEIRESEHGNDNGGVVSDSNSMSETSSSLFGCSLKTMLSKVFPSSNVNE. 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02773 260 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Seca5g02773 260 SMART ring_2 136 177 IPR001841 -
Seca5g02773 260 Pfam Ring finger domain 135 178 IPR001841 -
Seca5g02773 260 MobiDBLite consensus disorder prediction 211 233 - -
Seca5g02773 260 CDD RING-H2_EL5-like 135 178 - -
Seca5g02773 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 182 IPR013083 -
Seca5g02773 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 13 188 - -
Seca5g02773 260 FunFam RING-H2 finger protein ATL1 93 183 - -
Seca5g02773 260 SUPERFAMILY RING/U-box 126 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02773 Seca-Chr5 80397018 80397839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02773 4 229 Rapid Response to Elicitors AT3G16720 32.609 1.73e-33 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02773 - - lang:109329145 310.071