Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02747 ATGGAAGAAGCATGGAGATTGATGAGTTGGTTAGCGTTTGTGGTGATGGTGATATGGAGCATGAAACACAGTCATTGTTCGACTTTGAACAACGAAGGGTTGGCACTGCAGAAGATGAGAGAGAGGGTGGTGAGAGACCCATTGGGGGCTTTGTCGAATTGGAATAATGGCGAAGAAGAAGTCATTGATCCGTGTTCCTGGTTCGGAGTGCACTGCTCCCATGGCAGAGTTGTCTCCTTGAATTTGAAAGATCTATGTCTGTATGGAACACTAGCACCCGAAATTGGGAAGCTGGTTCACATAAAATCAATCATTTTGCGCAACAATTCTTTCTTCGGAGATATCCCAAAGGAGATACTACAATTAGAGGAACTTGAAGTTCTTGACTTGGGATATAACAACTTTAGTGGACCATTTCCATTAAAAGACCTTGGCAGCAATCCATCCCCTACCACCCTGCACATTGGCCAACAAGGAAATATAGCATATAGGCGGCAACTTCTCCAAGTAACAAATGCTGCTAAATCACCCAAAAGGGCCAAAACTAAGAAAGGTGATAACAAAGAGACCCCTTCACCATCAACATCACCTTTTCCCTCTTCATTATCACCAGTTTCTGAGACTTTCTCACCATCAGAAAGTCCCTCAAATTCACCAACACCATCACCACTAAGCTCTCCAGAAGTTTCCCCTTCACCATCTTTCTCTCCCTCTAGTATCTTTTTAACTCCTTCACCCTCACCTTCACCTGTGGTAGCACCAACTCCAGATATATCAGTTCCAGCAAATCCACCTGCTTTTGTGTCCACACCACCATATTCTAATTGGATTTCCATACCTTCCCCTGCTTTATCTTCAAACCAAGGGAATCCAAACAGTTCAAACTCAAAGAAACATTCTGTGATTATTTGGTCTACTGTTGGAGGTTTCTCCTTCCTTGTTTTGGTGTCAGCAATTGTTTTTGTTTGCTTCAGAAGTAGTAAAGTTACAACTGTAAAACCTTGGGCCACAGGGTTGAGTGGCCAGCTGAGGAAAGCATTTGTAACAGGTGTTCCAAGTCTGAAACGAGCAGAACTAGATGCAGCTTGTGAAGATTATAGCAACATTATTGGTTCTCTGCCAGATGGGACTATTTATAAGGGGACTCTTTCCAGTGGAGTTGAGATAGCTGTAGCATCCTCTGCTGTGACATCATCCCAAAACTGGTCAAAAAATATGGGAGCTCAATTCCGAAAGAAGGTAGACATGTTATCAAGGGTGAACCACAAGAATTTTGTGAATCTTATTGGCTATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAATATGCTCCAAATGGAACACTATTTGAGCATCTACACATTAGAGAAGCAGAACAACTTGACTGGGGAATGACAATGAGGATAGCTATGGGAATAGCCTACTGTCTGGAACACTTGCATCAGCTCACACCACCCATTGCCCACAGAAATCTGCAATCATCAACTATATACCTGACTGAAGATTATGCTGCTAAATTATCTGACCTTAGTTTCTGGAGTGACATAGATGCTACAAAGAAGGATTCTGAAGCCTCACAGACATTAGAAACAACTACAGCATATATAAAGGGCAATGTATACAGCTTTGGGGTAATATTGTTTGAATTGATGACAGGGAGAATTCCCTATGCAGTGGACAATGGCTTTCTTGCAGATTGGGCAGCAGAATATATAAGGGGACAACCGTTGAGAGACTTGGTGGATGCAAGCTTGACCTCTTTGCAAGCACATGAAATTGAAAAATGGTCAGAAGTGATTAATAGCTGTGTACATCCAGATCCAGAAAAAAGGCCAACTATGAGAGAGGTTACAGCCAAGTTGAAGGAATTAACTTCTATGGGACCTGATGGAGCAACTCCAAAAGCATCCCCTCTTTGGTGGGCAGAACTAGAAATTATGTCCACTGACTTCAGTTCAGACATTAATCCATAA 1983 0.4221 MEEAWRLMSWLAFVVMVIWSMKHSHCSTLNNEGLALQKMRERVVRDPLGALSNWNNGEEEVIDPCSWFGVHCSHGRVVSLNLKDLCLYGTLAPEIGKLVHIKSIILRNNSFFGDIPKEILQLEELEVLDLGYNNFSGPFPLKDLGSNPSPTTLHIGQQGNIAYRRQLLQVTNAAKSPKRAKTKKGDNKETPSPSTSPFPSSLSPVSETFSPSESPSNSPTPSPLSSPEVSPSPSFSPSSIFLTPSPSPSPVVAPTPDISVPANPPAFVSTPPYSNWISIPSPALSSNQGNPNSSNSKKHSVIIWSTVGGFSFLVLVSAIVFVCFRSSKVTTVKPWATGLSGQLRKAFVTGVPSLKRAELDAACEDYSNIIGSLPDGTIYKGTLSSGVEIAVASSAVTSSQNWSKNMGAQFRKKVDMLSRVNHKNFVNLIGYCEENKPFTRMMVFEYAPNGTLFEHLHIREAEQLDWGMTMRIAMGIAYCLEHLHQLTPPIAHRNLQSSTIYLTEDYAAKLSDLSFWSDIDATKKDSEASQTLETTTAYIKGNVYSFGVILFELMTGRIPYAVDNGFLADWAAEYIRGQPLRDLVDASLTSLQAHEIEKWSEVINSCVHPDPEKRPTMREVTAKLKELTSMGPDGATPKASPLWWAELEIMSTDFSSDINP. 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02747 660 Gene3D Phosphorylase Kinase; domain 1 342 446 - -
Seca5g02747 660 SUPERFAMILY L domain-like 35 156 - -
Seca5g02747 660 Gene3D Ribonuclease Inhibitor 33 148 IPR032675 -
Seca5g02747 660 Pfam Protein tyrosine and serine/threonine kinase 370 624 IPR001245 GO:0004672|GO:0006468
Seca5g02747 660 FunFam Inactive receptor-like serine/threonine-protein kinase 338 446 - -
Seca5g02747 660 Pfam Leucine rich repeat N-terminal domain 30 73 IPR013210 -
Seca5g02747 660 SUPERFAMILY Protein kinase-like (PK-like) 353 624 IPR011009 -
Seca5g02747 660 FunFam Leucine-rich repeat receptor-like kinase 35 162 - -
Seca5g02747 660 PANTHER PROTEIN MALE DISCOVERER 2 10 652 - -
Seca5g02747 660 MobiDBLite consensus disorder prediction 189 215 - -
Seca5g02747 660 ProSiteProfiles Protein kinase domain profile. 364 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02747 660 MobiDBLite consensus disorder prediction 172 240 - -
Seca5g02747 660 MobiDBLite consensus disorder prediction 216 230 - -
Seca5g02747 660 Gene3D Transferase(Phosphotransferase) domain 1 447 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02747 Seca-Chr5 79674381 79680011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02747 44 625 Receptor kinase-like Gene Family AT5G16000 26.537 7.93e-44 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Seca5g02747 PK_Tyr_Ser-Thr 4.4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02747 - - gmx:100814122 934.48