Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02719 ATGGGGGGTAACTCACCTTGTGCTTCTTGCAAATTGTTGAGACGCCGTTGCACACAGGAATGCATCTTTGCCCCTTATTTTCCTTCCGATGACCCTCGCAAGTTTGCCATTGTGCATAAGGTCTTTGGTGCTAGCAATATCAGCAAGATGCTCCAGGAGCTTCCGGTTCATCAAAGAGCAGATGCTGTGAGCAGTTTAGTTTATGAGGCAAATGCAAGAGTGAGAGACCCGGTTTATGGATGTGTAGGAGCCATATCATACCTTCAAAACCAGGTTTCACAATTGCAAATGCAGCTTGCAGTGGCTCAGGCAGAGATTCTCTGTATCCAGATGCAGCAAGAGCCTACCTTACCCACACAGTTTGACCAAGATGACAAATCTCTGCATCTATCTGACAATAATAATATTAACTATGAAATCCTTCCCCACTATCTCAACTTTCCTTCATCTTCTTCCTCATCTTCCAATGTATTCCAAGACTCTGAGCCTCTTAAGAGAGAGTCTTTTTGGACTTAA 516 0.4399 MGGNSPCASCKLLRRRCTQECIFAPYFPSDDPRKFAIVHKVFGASNISKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQEPTLPTQFDQDDKSLHLSDNNNINYEILPHYLNFPSSSSSSSNVFQDSEPLKRESFWT. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02719 171 Coils Coil 85 105 - -
Seca5g02719 171 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Seca5g02719 171 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Seca5g02719 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02719 Seca-Chr5 79189385 79190752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02719 3 171 AS2 family AT2G30130 67.196 1.09e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca5g02719 LOB 6.9e-43 No_clan