Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02717 ATGACACAGGGAATCTCATTCTTCGAGAGCAGAACATTACTGGTTCTATATTATGGCAGAGCTTCGATTTCCCAACAGATACGCTCCTTCCTTCCTGATCAAAGTCTCACCAGGTTCACTAACCTTGTTTCCTCCAGAAGCCAAGGCAACTATTCCTCTGGTTTCTACAAGCTGTTCTTCGACAACGACAATGTTCTCCGTCTTCTCTACGAAGGCCCTCGAGTTTCAAGTGTTTACTGGCCAGATCCTTGGCTTGTGAGCAACAATGTTGGACAGGGTAATGGTAGAACCACTTACAACAGTAGCAGGGTTGCTTCACTTGATCGTTTGGGGAAATTCGGTGCTTCTGATAATTTTATTTTAAAGACAACGGATTATGGGACAGTGCTCCAACGAAGATTGACTGTTGATTATGATGGGAATGTTCGTATTTATAGCAGGAAATATGAACATGAGATGTGGTCTGTATCAGGGCTATTCAAATCAGCAAACTGTTTCAGTCATGGGATTTGTGGACCTAATAGTCTTTGCAGATACGATCGGGAAATAGGTAGAAAGTGTTCGTGTATTCCAGGGTATAGCTGGGTCGATAAACAAGACTGGTCTCAAGGTTGCAAACCCAAATTCCCAATTTCTTGCAACAACAATACTCAGTATCGCTTCGTACCCTTGGCCCAAGCCGATTTTTATGGATATGACTATGGGTCTTCCTTTTCCAATTTCACCTTTAAACAATGTGTGAATCTTTGCTCGCGATTGTGCGAATGCATGGGATTTCAATACACCTCTGCGGTGGAGAATGGTCTTTTTTGGTGCTATCCAAAGACGCAGTTGCTGAATGGGCATCGTGCACTCGGTTTCACTGGAACAATCTTCGTGAAACTGCCGAAAAGCAGGGCTTTGGCCGATGAGAACCACATGGAAAATAATAGCTTGGTCTGTCCGACTGATATTGCAGCAACACTACTTGAAAGATCATATGTCAAAGGCAAAGAAAATGGATCAGTGAAGTTCATGCTTTGGTTTGCGACTGGCTTGGGAGGAGTTGAGCTCGTGTGCTTCCTTTTGGTGTGGTGTTTCTTATTTAAGAATACTGGCAAATACTTGGGTCCTGACAGAGAGGGCTATGTTCTTGCAGCAGCAACGGGATTCAGGAAATTCAGTTACTCTGAACTGAAACAAGCCACAAAAGGTTTCAGTCAAGAGATTGGAAGGGGTGCTGGAGGAATTGTGTATAAAGCTCTCTTATCAGATAAACGAGTAGCAGCAATAAAGCGGTTGTATGATGCAAACCAAGGAGAGAGTGAGTTTCTTGCAGAAGTAGGCATCATTGGAAGGCTTAACCACATGAACTTAATTGGCATGTGGGGGTATTGTGCTGAAGGTAAGCATAGGTTACTGGTGTATGAGTACATGGAAAATGGTTCCTTAGCTCGGAATCTCTCATCAAATGCACTTGATTGGAGTAAAAGGTATAACATAGCCCTGGGAACGGCAAGGGGTCTAGCCTACTTACATGAAGAATGCTTGGAGTGGGTTTTGCATTGTGATATAAAGCCCGAAAATTTACTTCTTGACTCTGATTACCAACCCAAGGTAGCTGATTTTGGCTTGTCTAAGTTATTAAATCGGAACAACCTCAACAATTCAAGTTTCTCAAGGATAAGAGGCACAAGAGGTTACATGGCACCAGAATGGGTTTTCAACTTGCCAATCACTTCCAAGGTGGATGTTTATAGCTATGGGATTGTTCTCTTGGAGATGATAACCGGAAGGAGCCCAACGATGGGTATTCAAATCACAGATGGAACAGAGTCACAATACGAGAGGTTGGTAACATGGGTGAGGGAGAAAAGGAGGAAAGGATCAGAAGGGGCATCTTGGGTGGAACAAATCGTTGACCCTGCTTCGGGATCAAATTATGACATGAAAAAATCGGAGATATTGGCAACAGTGGCTTTGGAATGTGTACTGGAAGATAAAGATGAGAGACCCAGCATGAGTCAAGTTGTGGAGAGGCTTCAAAGTTTGGAACATGATTCTTGA 2046 0.433 MTQGISFFESRTLLVLYYGRASISQQIRSFLPDQSLTRFTNLVSSRSQGNYSSGFYKLFFDNDNVLRLLYEGPRVSSVYWPDPWLVSNNVGQGNGRTTYNSSRVASLDRLGKFGASDNFILKTTDYGTVLQRRLTVDYDGNVRIYSRKYEHEMWSVSGLFKSANCFSHGICGPNSLCRYDREIGRKCSCIPGYSWVDKQDWSQGCKPKFPISCNNNTQYRFVPLAQADFYGYDYGSSFSNFTFKQCVNLCSRLCECMGFQYTSAVENGLFWCYPKTQLLNGHRALGFTGTIFVKLPKSRALADENHMENNSLVCPTDIAATLLERSYVKGKENGSVKFMLWFATGLGGVELVCFLLVWCFLFKNTGKYLGPDREGYVLAAATGFRKFSYSELKQATKGFSQEIGRGAGGIVYKALLSDKRVAAIKRLYDANQGESEFLAEVGIIGRLNHMNLIGMWGYCAEGKHRLLVYEYMENGSLARNLSSNALDWSKRYNIALGTARGLAYLHEECLEWVLHCDIKPENLLLDSDYQPKVADFGLSKLLNRNNLNNSSFSRIRGTRGYMAPEWVFNLPITSKVDVYSYGIVLLEMITGRSPTMGIQITDGTESQYERLVTWVREKRRKGSEGASWVEQIVDPASGSNYDMKKSEILATVALECVLEDKDERPSMSQVVERLQSLEHDS. 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02717 681 Pfam S-locus glycoprotein domain 131 194 IPR000858 GO:0048544
Seca5g02717 681 Gene3D Transferase(Phosphotransferase) domain 1 472 681 - -
Seca5g02717 681 SMART serkin_6 397 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02717 681 CDD STKc_IRAK 403 677 - -
Seca5g02717 681 ProSiteProfiles Protein kinase domain profile. 397 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02717 681 FunFam Serine/threonine-protein kinase 472 681 - -
Seca5g02717 681 PANTHER OS07G0415500 PROTEIN 27 678 - -
Seca5g02717 681 Pfam Protein kinase domain 400 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02717 681 FunFam S-receptor-like serine/threonine-protein kinase 370 471 - -
Seca5g02717 681 SUPERFAMILY Protein kinase-like (PK-like) 381 675 IPR011009 -
Seca5g02717 681 ProSitePatterns Protein kinases ATP-binding region signature. 403 425 IPR017441 GO:0005524
Seca5g02717 681 CDD PAN_AP_plant 209 296 - -
Seca5g02717 681 Gene3D Phosphorylase Kinase; domain 1 372 471 - -
Seca5g02717 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02717 Seca-Chr5 79132992 79135037 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02717 387 678 Trihelix Transcription Factor Family AT5G38560 43.624 6.68e-68 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca5g02717 Pkinase 5.8e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02717 - - gmx:100806357 990.719