Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02709 ATGTGGTCAGCATCAGTGCAATTCAAGTCACAACCTTGTTTTATTCATGAGATTTGTGGACCCAATAGTCTCTGCAGTAATCACCCAAGCACGGGTAGAAAGTGTTCGTGTATTCCAGGGCATAGCTTTATTGATGATCAAGATTGGTCTCAAGGTTGCAAACCGAATTTTCAACCTTCATGTGACAACAAGACAGAGTATAGCTTCGTATCCTTACCTTTTGTTGATTTTTATGGATATGACTATGCTTCATCCTTTGTAAATTACACCTATAAACAATGTGAGAATCAGTGCTTGCAATTGTGCCAATGCATGGGATTCCAGTACGGATTTTCGGTGGACAATGGTTATTCTTCGTGTTATCCGAAAACCATGTTGCTAAATGGGCATCGTTCACTGAGTTTCATAGGAACATTCTACTTGCAATTTGCAAAAAGTAGTGCTTTGGCCGATGAGAACCACATGGAAAATAATAGCTTGGTCTGTTCGACAGATATTGAAAGATCACATGTCAAAGGCAAAGAAAATAGATCGGTGAAGTTCATGCTTTGGTTTGCGACTGGCTTGGGAGGAGTTGAGCTCGTATGCTTCCTTTTGGTGTGGTGTTTCTTATTTAAGAATACTAGCAAACACTTGGGTACATACACACAAGGAAATGTTCTTGAAGCAGCAATTGGATTCAGGAAATTCAGTTACTCTGAACTGAAACAAGCCACAAAAGGTTTCAGTCAAGAGATTGGAAGGGGTGCTGGAGGAATTGTGTATAAAGCTATCTTATCAGATAAACGAGTTGCAGCAATAAAGCGATTGTATGATGCGAACCAAGGAGAGAGTGAGTTTCTTGCAGAAGTAGGCATCATTGGAAGGCTTAACCACATGAACTTAATTGGCATGTGGGGGTATTGTGCTGAAGGTAAGCATAGGTTGCTGGTGTATGAGTACATGGAAAATGGTTCCTTAGCTCGGAATCTCTCATCAAATGCACTTGATTGGAGTAAAGGGTATAACATAGCTCTAGGAACGGCAAGGGGTCTAGCCTACTTACATGAAGAATGCTTAGAGTGGGTTTTGCATTGTGATATAAAGCCTGAAAATTTACTTCTTGACTCTGATTACCAACCCAAGGTAGCTGATTTTGGCTTGTCTAAGTTATTAAATCGGAACAACCTCAACAATTCAAGCTTCTCAAGGATAAGAGGGACTAGAGGTTACATGGCACCAAAATGGGTTTTCAACTTGCCAATAACTTCCAAGGTGGATGTTTATAGCTATGGGATTGTTCTCTTGGAGATAATAACCGGAAGGAGCCCAATGATGGGTATTCAAATCACAGATGGAACAGAGTCACAATATGAGAGGTTGGTAACATGGGTGAGGGAGAAAAGAAGGAAAGGATCAGAAGGGGCATCTTGGGTGGAACAAATTGTTGACCCTGCTTTGGGATCAAATTATGACATGAAAAAATTGGAGATATTGGCAACAGTGGCTTTGGAATGTGTACTAGAAGATAAAGATGAGAGACCCAACATGAGTCAAGTTGTTGAGAGGCTTCAAAGTCTTGAACATGATTTTTGA 1575 0.4051 MWSASVQFKSQPCFIHEICGPNSLCSNHPSTGRKCSCIPGHSFIDDQDWSQGCKPNFQPSCDNKTEYSFVSLPFVDFYGYDYASSFVNYTYKQCENQCLQLCQCMGFQYGFSVDNGYSSCYPKTMLLNGHRSLSFIGTFYLQFAKSSALADENHMENNSLVCSTDIERSHVKGKENRSVKFMLWFATGLGGVELVCFLLVWCFLFKNTSKHLGTYTQGNVLEAAIGFRKFSYSELKQATKGFSQEIGRGAGGIVYKAILSDKRVAAIKRLYDANQGESEFLAEVGIIGRLNHMNLIGMWGYCAEGKHRLLVYEYMENGSLARNLSSNALDWSKGYNIALGTARGLAYLHEECLEWVLHCDIKPENLLLDSDYQPKVADFGLSKLLNRNNLNNSSFSRIRGTRGYMAPKWVFNLPITSKVDVYSYGIVLLEIITGRSPMMGIQITDGTESQYERLVTWVREKRRKGSEGASWVEQIVDPALGSNYDMKKLEILATVALECVLEDKDERPNMSQVVERLQSLEHDF. 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02709 524 SMART serkin_6 240 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02709 524 FunFam S-receptor-like serine/threonine-protein kinase 209 314 - -
Seca5g02709 524 Gene3D Transferase(Phosphotransferase) domain 1 315 523 - -
Seca5g02709 524 FunFam Serine/threonine-protein kinase 315 524 - -
Seca5g02709 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 356 368 IPR008271 GO:0004672|GO:0006468
Seca5g02709 524 ProSitePatterns Protein kinases ATP-binding region signature. 246 268 IPR017441 GO:0005524
Seca5g02709 524 ProSiteProfiles PAN/Apple domain profile. 61 148 IPR003609 -
Seca5g02709 524 PANTHER OS07G0415500 PROTEIN 2 521 - -
Seca5g02709 524 SUPERFAMILY Protein kinase-like (PK-like) 221 518 IPR011009 -
Seca5g02709 524 Gene3D Phosphorylase Kinase; domain 1 206 314 - -
Seca5g02709 524 CDD PAN_AP_plant 57 141 - -
Seca5g02709 524 Pfam Protein kinase domain 243 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02709 524 ProSiteProfiles Protein kinase domain profile. 240 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02709 Seca-Chr5 78994040 78995614 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02709 230 521 Trihelix Transcription Factor Family AT5G38560 43.289 2.38e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca5g02709 Pkinase 1.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02709 - - pvu:PHAVU_010G088500g 754.207