LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g02709	ATGTGGTCAGCATCAGTGCAATTCAAGTCACAACCTTGTTTTATTCATGAGATTTGTGGACCCAATAGTCTCTGCAGTAATCACCCAAGCACGGGTAGAAAGTGTTCGTGTATTCCAGGGCATAGCTTTATTGATGATCAAGATTGGTCTCAAGGTTGCAAACCGAATTTTCAACCTTCATGTGACAACAAGACAGAGTATAGCTTCGTATCCTTACCTTTTGTTGATTTTTATGGATATGACTATGCTTCATCCTTTGTAAATTACACCTATAAACAATGTGAGAATCAGTGCTTGCAATTGTGCCAATGCATGGGATTCCAGTACGGATTTTCGGTGGACAATGGTTATTCTTCGTGTTATCCGAAAACCATGTTGCTAAATGGGCATCGTTCACTGAGTTTCATAGGAACATTCTACTTGCAATTTGCAAAAAGTAGTGCTTTGGCCGATGAGAACCACATGGAAAATAATAGCTTGGTCTGTTCGACAGATATTGAAAGATCACATGTCAAAGGCAAAGAAAATAGATCGGTGAAGTTCATGCTTTGGTTTGCGACTGGCTTGGGAGGAGTTGAGCTCGTATGCTTCCTTTTGGTGTGGTGTTTCTTATTTAAGAATACTAGCAAACACTTGGGTACATACACACAAGGAAATGTTCTTGAAGCAGCAATTGGATTCAGGAAATTCAGTTACTCTGAACTGAAACAAGCCACAAAAGGTTTCAGTCAAGAGATTGGAAGGGGTGCTGGAGGAATTGTGTATAAAGCTATCTTATCAGATAAACGAGTTGCAGCAATAAAGCGATTGTATGATGCGAACCAAGGAGAGAGTGAGTTTCTTGCAGAAGTAGGCATCATTGGAAGGCTTAACCACATGAACTTAATTGGCATGTGGGGGTATTGTGCTGAAGGTAAGCATAGGTTGCTGGTGTATGAGTACATGGAAAATGGTTCCTTAGCTCGGAATCTCTCATCAAATGCACTTGATTGGAGTAAAGGGTATAACATAGCTCTAGGAACGGCAAGGGGTCTAGCCTACTTACATGAAGAATGCTTAGAGTGGGTTTTGCATTGTGATATAAAGCCTGAAAATTTACTTCTTGACTCTGATTACCAACCCAAGGTAGCTGATTTTGGCTTGTCTAAGTTATTAAATCGGAACAACCTCAACAATTCAAGCTTCTCAAGGATAAGAGGGACTAGAGGTTACATGGCACCAAAATGGGTTTTCAACTTGCCAATAACTTCCAAGGTGGATGTTTATAGCTATGGGATTGTTCTCTTGGAGATAATAACCGGAAGGAGCCCAATGATGGGTATTCAAATCACAGATGGAACAGAGTCACAATATGAGAGGTTGGTAACATGGGTGAGGGAGAAAAGAAGGAAAGGATCAGAAGGGGCATCTTGGGTGGAACAAATTGTTGACCCTGCTTTGGGATCAAATTATGACATGAAAAAATTGGAGATATTGGCAACAGTGGCTTTGGAATGTGTACTAGAAGATAAAGATGAGAGACCCAACATGAGTCAAGTTGTTGAGAGGCTTCAAAGTCTTGAACATGATTTTTGA	1575	0.4051	MWSASVQFKSQPCFIHEICGPNSLCSNHPSTGRKCSCIPGHSFIDDQDWSQGCKPNFQPSCDNKTEYSFVSLPFVDFYGYDYASSFVNYTYKQCENQCLQLCQCMGFQYGFSVDNGYSSCYPKTMLLNGHRSLSFIGTFYLQFAKSSALADENHMENNSLVCSTDIERSHVKGKENRSVKFMLWFATGLGGVELVCFLLVWCFLFKNTSKHLGTYTQGNVLEAAIGFRKFSYSELKQATKGFSQEIGRGAGGIVYKAILSDKRVAAIKRLYDANQGESEFLAEVGIIGRLNHMNLIGMWGYCAEGKHRLLVYEYMENGSLARNLSSNALDWSKGYNIALGTARGLAYLHEECLEWVLHCDIKPENLLLDSDYQPKVADFGLSKLLNRNNLNNSSFSRIRGTRGYMAPKWVFNLPITSKVDVYSYGIVLLEIITGRSPMMGIQITDGTESQYERLVTWVREKRRKGSEGASWVEQIVDPALGSNYDMKKLEILATVALECVLEDKDERPNMSQVVERLQSLEHDF.	525

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca5g02709	524	SMART	serkin_6	240	520	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Seca5g02709	524	FunFam	S-receptor-like serine/threonine-protein kinase	209	314	-	-
Seca5g02709	524	Gene3D	Transferase(Phosphotransferase) domain 1	315	523	-	-
Seca5g02709	524	FunFam	Serine/threonine-protein kinase	315	524	-	-
Seca5g02709	524	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	356	368	IPR008271	GO:0004672\|GO:0006468
Seca5g02709	524	ProSitePatterns	Protein kinases ATP-binding region signature.	246	268	IPR017441	GO:0005524
Seca5g02709	524	ProSiteProfiles	PAN/Apple domain profile.	61	148	IPR003609	-
Seca5g02709	524	PANTHER	OS07G0415500 PROTEIN	2	521	-	-
Seca5g02709	524	SUPERFAMILY	Protein kinase-like (PK-like)	221	518	IPR011009	-
Seca5g02709	524	Gene3D	Phosphorylase Kinase; domain 1	206	314	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g02709	Seca-Chr5	78994040	78995614	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g02709	230	521	Trihelix Transcription Factor Family	AT5G38560	43.289	2.38e-69	233

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Seca5g02709		Pkinase	1.2e-50	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g02709	-		-	pvu:PHAVU_010G088500g	754.207

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