LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g02702	ATGGCAAACCGTGACCAACCAGTCAATGGAAAACGCTCAACACTTTCCCTTCTCAAGACAGGTAATCTCGTCTTAACCGATGCAGCTCAGTCCAATGTTTGGTCCTCAAACACTGTCTCATCCAAACCACTTGAGTTGATTTTGTATGACACAGGGAATCTTATTCTCCGAGAGCAGAACGTTTCTGGTTCTGTTCTATGGCAGAGCTTCGACTTCCCAATAGATACACTCCTTCCTGATCAAACTCTCACCAGATTCACCAACCTTGTTTCCTCCAAAAGCCAGACCAACTATTCCTCTGGTTTCTATAAGTTGTTCTTTGACAACGACAATATTCTCCGTCTACTTTACGATAGCCCTCGAGTTTCAAGCGTTTATTGGCCAGATCCTTGGCTTGTGAGCTATCAAGTTGGTAGATCCACATACAATAATAGCAGGATTGCAGTGCTAGATAGTTTGGGGGAATTCAGTTCTTCTGATCATTTCAATTTAAGGACATCTGATTATGGGACAGTGCTCCAACGAAGATTGACCCTTGATCATGATGGTAATGTTCGTGTTTATAGCCGAAAAGATGGACACGAGAAGTGGTCAATATCAGGGCAATTTCGGCAACAACCTTGTTTCATTCATGGGATTTGTGGACCCAATAGTCTCTGCAGTTATCACCCAAGTAGTGGTAGAAAGTGTTCGTGTCTTCCAGGCTATAGCAGGGTCGATAAACAAGACTGGTCTCAAGGTTGCAAACCAAACTTCCAGCTTTCATGTACCAACAAGTCCGAGTCACGCTTCCAATACTTACCCAATGTTGATTTTTATGGATATGACTATGGGTACTATCAAAATTACACCTATCAACAGTGTAAAGATTTGTGCTTGCAACTCTGTGAATGCATAGGCTTCCGGCACACTTTTTGGGAGTCTGATGGTGTCTATAGGTGTTATCCAAAGACGCAGTTGCTAAATGGGCATCGTTCACTCAATTTATCAGGATCAATCTTCTTGCGATTTCCGAAAAGCAATGATTTTTTTCAAGAGAACCATATGAAAGATAATGGCTTGGTTTGTTTGAGAAATGCAGCAAAACAACTAGAAAGGTCATATGTCAAAGGCAAAGAAAATGAATCGGTGAAGTTCATGCTTTGGTTTGCGACTGCCTTGGGAGGAGTTGAGCTCGTGTGCTTTCTTTTGGTGTGGTGTTTCTTATTTAAGAATACTAGCAAACACTTGGGTCCTGACAGAGAGGGCTATGTTCTTGCAACTGCAACGGGATTCAGAAAATTCAGTTACTCTGAACTGAAGCAAGCCACAAAAGGTTTCAGTCAAGAGATTGGAAGGGGTGGTGGAGGAATTGTGTATAAAGCTGTGTTATCAGATAATCGAGTTGCCGCAATAAAGCGATTGTATGATGCAAACCAAGGAGAGAGTGAGTTTCTTGCAGAAGTAGGCATCATTGGAAGGCTTAACCATATGAACTTAATTGGCATGTGGGGTTATTGTGCAGAGGGAAAGCACAGGTTGTTGGTGTATGAGTACATGGAAAATGGTTCTTTAGCTCACAATCTCTCCTTAAATGCACTAGATTGGGATAAAAGGTATAACATTGCCCTAGGAACAGCAAGGGGTTTGGCCTATTTACATGAAGAATGCTTGGAGTGGATTTTGCACTGTGATATAAAGCCACATAACATTCTTCTTGATTCTGATTATCAACCCAAGGTTGCGGATTTTGGCTTGTCTATGCTTCTACATCGGAATAATGTGAACAAATCAAGCTTCTCAAGGATAAGAGGAACAAAGGGTTACATGGCTCCGGAATGGGTTTTCAACTTGCCAATCACGTCCAAGGTGGATGTTTATAGCTATGGAATTGTTGTCTTGGAGATTATAACTGGAAGGAGCCCAACAACAGGTGTCCAAATCACAGATGGCACGGAGTCACATCACGAGAGGTTGGTAACATGGGTGAGGGAAAAAAAGAGGAAAGGATCAGAAGGGGCATCTTGGGTGGAACAAATTGCTGACCCTGCTATGGGAGCAAGTTTTGACATGAATAGAATGGAGACATTGGCAATGGTGGCTTTGGATTGTGTAGAGGAAGAGAAAGACCTCAGACCCAGCATGAGCCAAGTTGTTGAGAGGCTCCAAAGTCATGAACATGATTTGTAG	2169	0.4246	MANRDQPVNGKRSTLSLLKTGNLVLTDAAQSNVWSSNTVSSKPLELILYDTGNLILREQNVSGSVLWQSFDFPIDTLLPDQTLTRFTNLVSSKSQTNYSSGFYKLFFDNDNILRLLYDSPRVSSVYWPDPWLVSYQVGRSTYNNSRIAVLDSLGEFSSSDHFNLRTSDYGTVLQRRLTLDHDGNVRVYSRKDGHEKWSISGQFRQQPCFIHGICGPNSLCSYHPSSGRKCSCLPGYSRVDKQDWSQGCKPNFQLSCTNKSESRFQYLPNVDFYGYDYGYYQNYTYQQCKDLCLQLCECIGFRHTFWESDGVYRCYPKTQLLNGHRSLNLSGSIFLRFPKSNDFFQENHMKDNGLVCLRNAAKQLERSYVKGKENESVKFMLWFATALGGVELVCFLLVWCFLFKNTSKHLGPDREGYVLATATGFRKFSYSELKQATKGFSQEIGRGGGGIVYKAVLSDNRVAAIKRLYDANQGESEFLAEVGIIGRLNHMNLIGMWGYCAEGKHRLLVYEYMENGSLAHNLSLNALDWDKRYNIALGTARGLAYLHEECLEWILHCDIKPHNILLDSDYQPKVADFGLSMLLHRNNVNKSSFSRIRGTKGYMAPEWVFNLPITSKVDVYSYGIVVLEIITGRSPTTGVQITDGTESHHERLVTWVREKKRKGSEGASWVEQIADPAMGASFDMNRMETLAMVALDCVEEEKDLRPSMSQVVERLQSHEHDL.	723

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g02702	722	Pfam	Protein kinase domain	441	713	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca5g02702	722	PIRSF	SRK	1	722	IPR024171	GO:0004674
	Seca5g02702	722	SMART	serkin_6	438	717	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca5g02702	722	Gene3D	Transferase(Phosphotransferase) domain 1	513	721	-	-
	Seca5g02702	722	Gene3D	-	1	115	IPR036426	-
	Seca5g02702	722	ProSiteProfiles	Protein kinase domain profile.	438	722	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca5g02702	722	SUPERFAMILY	Protein kinase-like (PK-like)	421	716	IPR011009	-
	Seca5g02702	722	FunFam	S-receptor-like serine/threonine-protein kinase	407	512	-	-
	Seca5g02702	722	CDD	STKc_IRAK	444	716	-	-
	Seca5g02702	722	SUPERFAMILY	alpha-D-mannose-specific plant lectins	1	128	IPR036426	-
	Seca5g02702	722	PANTHER	OS07G0415500 PROTEIN	1	718	-	-
	Seca5g02702	722	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	554	566	IPR008271	GO:0004672\|GO:0006468
	Seca5g02702	722	ProSiteProfiles	Bulb-type lectin domain profile.	1	69	IPR001480	-
	Seca5g02702	722	ProSitePatterns	Protein kinases ATP-binding region signature.	444	466	IPR017441	GO:0005524
	Seca5g02702	722	Pfam	S-locus glycoprotein domain	173	238	IPR000858	GO:0048544
	Seca5g02702	722	Pfam	D-mannose binding lectin	2	85	IPR001480	-
	Seca5g02702	722	Gene3D	Phosphorylase Kinase; domain 1	405	512	-	-
	Seca5g02702	722	FunFam	Serine/threonine-protein kinase	513	722	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g02702	Seca-Chr5	78816343	78818511	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g02702	428	719	Trihelix Transcription Factor Family	AT5G38560	43.624	1.34e-67	233

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Seca5g02702		Pkinase	1.2e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g02702	-		-	gmx:100806357	1063.52