Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02696 ATGCGGAATTGGGGGAAATGGGTTTCTGAAATCCGTGAGCCAAGGAAGAAATCGAGAATATGGCTAGGGACATTCCCCACACCAGAAATGGCAGCAAGAGCACATGACGTGGCAGCTTTGAGCATCAAAGGAACCTCTGCCATTCTCAACTTCCCTCACCTCGCCACGTGTTTCCCTCGTCCTGCTTCTTTAGCCCCTCGTAAACGAACATGA 213 0.507 MRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTSAILNFPHLATCFPRPASLAPRKRT. 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02696 70 PIRSF PTI6 1 64 IPR017392 GO:0003700
Seca5g02696 70 SUPERFAMILY DNA-binding domain 2 53 IPR016177 GO:0003677
Seca5g02696 70 SMART rav1_2 1 58 IPR001471 GO:0003700|GO:0006355
Seca5g02696 70 CDD AP2 1 54 IPR001471 GO:0003700|GO:0006355
Seca5g02696 70 Gene3D AP2/ERF domain 1 53 IPR036955 GO:0003700|GO:0006355
Seca5g02696 70 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700|GO:0006355
Seca5g02696 70 FunFam Ethylene-responsive transcription factor 2 1 53 - -
Seca5g02696 70 Pfam AP2 domain 2 44 IPR001471 GO:0003700|GO:0006355
Seca5g02696 70 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02696 Seca-Chr5 78683885 78684097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02696 1 68 AP2-EREBP Transcription Factor Family AT5G11590 89.706 9.71e-41 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca5g02696 AP2 2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02696 K09286 - mnt:21393991 132.109