Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02676 ATGGCACCTGAGTATGCTCGCCATGGACTATTCTCAGTGAAATCTGATGTTTATAGTTTTGGAGTACTTCTTCTAGAGATTGTGAGTGGCCAAAAAAATAGCAGTGTCCGTGGAGGGGAGAATGTACAAGATCTAGTAACCTTTGCATGGCAAAGGTGGAGGGAAGGGACTGTCCCAAGTATTGTTGATCCTACAATTACTGATGGTTCAAGAAATGAAATATTGAGATGCATCCATATTGCCTAG 246 0.4187 MAPEYARHGLFSVKSDVYSFGVLLLEIVSGQKNSSVRGGENVQDLVTFAWQRWREGTVPSIVDPTITDGSRNEILRCIHIA. 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02676 81 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 81 - -
Seca5g02676 81 SUPERFAMILY Protein kinase-like (PK-like) 1 64 IPR011009 -
Seca5g02676 81 Gene3D Transferase(Phosphotransferase) domain 1 1 81 - -
Seca5g02676 81 Pfam Protein tyrosine and serine/threonine kinase 1 33 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02676 Seca-Chr5 75190822 75191433 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02676 1 81 Receptor kinase-like Gene Family AT4G21410 57.831 7.95e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g02676 PK_Tyr_Ser-Thr 1.6e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02676 - - gmx:113000773 132.88