Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02674 ATGGTCTTTCAGAGAATAATGCCTTTGTTTCTATGTCTACTTGTTATTCTGATATCTCAAGCCACTGCCACTGTCAAGCCAGAATACAACTACACACACTGCTTCCAATATGGAGATTATCCCCCTGATAGCACCTATCAGACCAACCTCAAAGCCCTTCTTTCAAGACTAACTTCCAACACACAAATTGACTATGGCTTCTACAATTCATCCTATGGTGACTCCAACAATGAAGTCTACGTAACTGGGCTTTGCAGGGGAGATGTTACTTCACATACATGCCAAAGTTGCCTCAACGATTTAAGTTCCCTTCTCCTGAATCAATGTCCAAAAGAGATGGAGGCAGTGGGACTATATGATAAATGCATATTACACTATTCATATCGCGCAATATATGGTTACGATTCATATGAATATGCATTCCTGGTCTACTATGTGGCGAGTGACACTAATGTCACAAATTGGGATCAATACAATTCTGTGCTAATGAATTTGTTGTCAAGACTAAAAAAAGCTGCAATAAGTGATTCTCATCCCAATCGTAAGTTTGCTGTAGGAAAAGCTACAGGTACAAATTCTCAAACTATATATGGAGTTGTTCAGTGCTCACCTGATTTGACAGTGGCAGAATGCAATGACTGTTTGGATGGTGCTGTCTCAGAAATTGCAAATTATTGTTATAACAAGTCAGCTGGTGCAATTATTAAACTTAGTTGTAACTTAAGATATCAGAATTCCAGCTTCTATGAGCCTACGACTGATGAATTGACACTACCATTACAATTGTCACCGCAACCATCTCCTCCTGCACCATCCAATACTGCAAACTCCTCACACACTACTCATCACGGAAACAAGAAATCACAAGCTATCATAGCCGAAGTTGTGGCTACTGTTGCCTGTGTTGGGTTGCTGATCTTTATTTGCATCTACTTAATAGTGAGGAAGGCAACAAAACATATTGAGAGTAAGTCCAGATGTGAAGTGAAAATTGTCAATGAAAATATAGGAGAGTCATTACAATTTGACTTTGACACCATCAGAATTGCTACAAACGACTTCTCTGATGCAAATAAGCTTGGACAAGGTGGATTTGGTCCTGTTTACAAGGGCATTCTCTTTGATAAACAAGAAATTGCAGTCAAAAGGTTATCTGATAATTCTGGACAAGGAGATATTGAATTCAAGAATGAAGTGCTGTTGATGGCCAGACTCAAACACCAAAATTTAGTCAGGCTCCTTGGTTTCTGTTATGAAAGAGAAGAACGGTTACTTGTCTATGAGTTTCTTCCCAATAGAAGCCTTGACTACTTCTTATTTGATTCAATTAAGCGCAGAGAGTTGGATTGGAAAATGCGCTACAAAATAATTGAAGGCATTGCAAGGGGCCTTCTTTACCTTCATGAGGATTCTCAACTTAGGATTATTCATCGTGATCTTAAAGCAAGTAACATTCTTTTAGATGCAGAGATGAACCCTAAGATATCAGATTTCGGTTTGGCAAAGCTGTTTGTTGTGGATCAAACTCATGCTGTTGCAAGTAAAATTGCAGGAACCCTTGGATATATGGCACCTGAGTATGCAAGGCATGGAAAATTCTCAGCCAAGTCAGATGTCTTTAGTTTTGGTGTTATAATACTAGAGATTGTAAGTGGCCAAAAGAATGGTCGATTTCATAATGGAGAGAATGTGGAGCATCTATTAAGCTTTGCTTGGAACAATTGGAGGAAGGGTACAATTTCTAATATCATAGATCCCACCTTAAATGATGATGCTTTAAGAGATGAAATAACAAGATGCAGTCATATTGGGTTACTTTGTGTTCAAGAAAGGGTTGCTGACAGACCAACTTTGGCTTCAGTTATGCTTATGCTTGATAGCCACTCTTTCTCTCTCCCAGTTCCCTTGCAACCTGCCTTTTATATGAAAGCTAGATGCTTGCCAAACTTCCATTTTTCAGAGTGCAGTTCTGTGCCATCAGGATCAAATGAACTCAAAGGTAACTCTGTTGAAGTGTCCATAAATGAGGCCTCAATTAGTAGTATGTGTCCTCGTTAG 2058 0.3902 MVFQRIMPLFLCLLVILISQATATVKPEYNYTHCFQYGDYPPDSTYQTNLKALLSRLTSNTQIDYGFYNSSYGDSNNEVYVTGLCRGDVTSHTCQSCLNDLSSLLLNQCPKEMEAVGLYDKCILHYSYRAIYGYDSYEYAFLVYYVASDTNVTNWDQYNSVLMNLLSRLKKAAISDSHPNRKFAVGKATGTNSQTIYGVVQCSPDLTVAECNDCLDGAVSEIANYCYNKSAGAIIKLSCNLRYQNSSFYEPTTDELTLPLQLSPQPSPPAPSNTANSSHTTHHGNKKSQAIIAEVVATVACVGLLIFICIYLIVRKATKHIESKSRCEVKIVNENIGESLQFDFDTIRIATNDFSDANKLGQGGFGPVYKGILFDKQEIAVKRLSDNSGQGDIEFKNEVLLMARLKHQNLVRLLGFCYEREERLLVYEFLPNRSLDYFLFDSIKRRELDWKMRYKIIEGIARGLLYLHEDSQLRIIHRDLKASNILLDAEMNPKISDFGLAKLFVVDQTHAVASKIAGTLGYMAPEYARHGKFSAKSDVFSFGVIILEIVSGQKNGRFHNGENVEHLLSFAWNNWRKGTISNIIDPTLNDDALRDEITRCSHIGLLCVQERVADRPTLASVMLMLDSHSFSLPVPLQPAFYMKARCLPNFHFSECSSVPSGSNELKGNSVEVSINEASISSMCPR. 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02674 685 FunFam Cysteine-rich receptor-like protein kinase 10 315 429 - -
Seca5g02674 685 Gene3D Transferase(Phosphotransferase) domain 1 430 631 - -
Seca5g02674 685 SUPERFAMILY Protein kinase-like (PK-like) 337 645 IPR011009 -
Seca5g02674 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Seca5g02674 685 CDD STKc_IRAK 360 626 - -
Seca5g02674 685 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 38 677 - -
Seca5g02674 685 MobiDBLite consensus disorder prediction 259 283 - -
Seca5g02674 685 Gene3D Phosphorylase Kinase; domain 1 313 429 - -
Seca5g02674 685 Gene3D - 28 130 IPR038408 -
Seca5g02674 685 Gene3D - 139 248 IPR038408 -
Seca5g02674 685 ProSiteProfiles Protein kinase domain profile. 354 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02674 685 FunFam Cysteine-rich receptor-like protein kinase 28 430 633 - -
Seca5g02674 685 Pfam Protein tyrosine and serine/threonine kinase 358 621 IPR001245 GO:0004672|GO:0006468
Seca5g02674 685 FunFam Cysteine-rich receptor-like protein kinase 10 142 248 - -
Seca5g02674 685 SMART serkin_6 354 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02674 685 Pfam Salt stress response/antifungal 38 127 IPR002902 -
Seca5g02674 685 Pfam Salt stress response/antifungal 150 245 IPR002902 -
Seca5g02674 685 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Seca5g02674 685 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 131 - -
Seca5g02674 685 ProSiteProfiles Gnk2-homologous domain profile. 140 248 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02674 Seca-Chr5 75048430 75051980 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02674 5 685 Receptor kinase-like Gene Family AT4G21410 46.132 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g02674 PK_Tyr_Ser-Thr 6.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02674 - - gmx:100790058 868.996