LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g02673	ATGCCAACCTCATCACCCTTTTGTCCAACCTCTCTTCCAACACTGAAATTGATTATGGCTTCTACAATTTCTCCAAAGGCCAAAACTCTGACAAAGTTAACGCAATTGGGCTTTGTAGAGGAGACGTTAAGCCAGATGCTTGTCGTAGTTGCCTCAATGATTCGAGAGTCCTTCTCACACAACTCTGTCCAAATCAAAAGGAGGCAATTGGGTGGTACGATAAATGCATGTTGCGTTACTCTAGCCGTTCAATATTTGGGATTTTGCAATCTCAACCTTTGCGGAATATGCATAACTTGGGATGCAACAGATGTGAGTGAGTACAATAAAGTGGTTAGTGACTTGCTGGATAGTTTACGAAGCAGAGCAGCTTCTGGTGACTCAGAAATGAAGTTTGCAGCAGCAAACAGAACAGGTCCAAGCTTTCAAACAATATTTGGTCATGTTCAGTGCACACCTGATTTGTCAGAGATACAATGCAACCAGTGCTTGTTTACCGCAATCTCATTTATCCCAAACTGCTGTGCTGGCAAGATACGTGGTAGAATTTTCGCACCAAGTTGTAATGTTAGATTTGACACTACGCCTTACTATGATCTTAACGCTCTGCTCGTACAGCAACCTTCTTCTTCTCCTTCTCCTAATTCTCCATCCATCACTTCCACCTTCAAACAAGGAAAGAGCAATTCATCACGAACTGCCATTGCAATAATTGTGCCAATTGTCTCCTTTGTAGTATTCCTCATCTTTATTTGCATCTACTTAAGGGGAAGGAAGCCAAGAAAGTATTTTGAAAGCAAGTCCAATGTACAAAGTAAGTCCATTAATGTACGTGAATCTGAAGCTGAATATGAAATTGAACCTACTGAGACATTACAATTCGACTTCCAAACCATCATTGATGCTACAAATAACTTTTCAGATGAAAATAAGCTTGGACAGGGTGGATTTGGACATGTCTACAAGGGTAGGCTTCCCAATGACAAAGAAGTTGCTATCAAAAGGTTGTCCAAGAATTCTGGCCAAGGAGATATAGAATTTAAAAATGAACTGCTTTTAGTAACAAAGCTTCAACATCGAAATTTAGCAAGGCTACTTGGCTTTTGTTTGGAAACAGGAGAAAGGATATTGGTCTACGAGTTTCTTCCCAATAAAAGCCTTGATTACTTCATATTTGATCCAGTCAAGCGTTTATGTTTGGATTGGGAAAGGCGCTACAAGATTATAGAAGGTATTGCTCGAGGTCTTGTATATCTTCATGAGGATTCTCGATTGCGTGTTATTCACCGCGATCTCAAAGCAAGCAACATACTCTTAGATGATGACATGAATCCTAAAATATCAGATTTTGGCATGGCAAGACTATTTGGTGCAGATCAAACTCTAGGAAACACAATAAGAGTTGTTGGAACCCATGGATATATGGCACCTGAATATGCATTACAGGGACATTTCTCAGTGAAGTCAGATGTTTTTAGCTTCGGTGTGCTAGTTCTTGAGATAGTTAGTGGGCATAGAAACAATGACATCCACAATGGCGATTATGTAGAACATCTAATAAACTTTAACCTCAAGGTTCATATCAAAGGGACAGCCTCAAATATTGTAGATCCAACAATGAACATTGATTCAAGAAGCGAAATGATGAGATGCATCCATATTGCATTACTTTGTGTTCAAGAAAATGTAGCCAATAGACCAACCATGGAAACAGTTGTTGCCATGCTCAACAACTACTCATGCACTCTTCCAGTACTCTCACAACCTGCATATTTCATAAATGCTAGAGGTACAATATCAGATGAATCAAGAAATAACTCCTCAATGCAAGCATCAATAAATGAGGTTTCCATTACCGAGGTAGATCCTCGCTAG	1875	0.3957	MPTSSPFCPTSLPTLKLIMASTISPKAKTLTKLTQLGFVEETLSQMLVVVASMIRESFSHNSVQIKRRQLGGTINACCVTLAVQYLGFCNLNLCGICITWDATDVSEYNKVVSDLLDSLRSRAASGDSEMKFAAANRTGPSFQTIFGHVQCTPDLSEIQCNQCLFTAISFIPNCCAGKIRGRIFAPSCNVRFDTTPYYDLNALLVQQPSSSPSPNSPSITSTFKQGKSNSSRTAIAIIVPIVSFVVFLIFICIYLRGRKPRKYFESKSNVQSKSINVRESEAEYEIEPTETLQFDFQTIIDATNNFSDENKLGQGGFGHVYKGRLPNDKEVAIKRLSKNSGQGDIEFKNELLLVTKLQHRNLARLLGFCLETGERILVYEFLPNKSLDYFIFDPVKRLCLDWERRYKIIEGIARGLVYLHEDSRLRVIHRDLKASNILLDDDMNPKISDFGMARLFGADQTLGNTIRVVGTHGYMAPEYALQGHFSVKSDVFSFGVLVLEIVSGHRNNDIHNGDYVEHLINFNLKVHIKGTASNIVDPTMNIDSRSEMMRCIHIALLCVQENVANRPTMETVVAMLNNYSCTLPVLSQPAYFINARGTISDESRNNSSMQASINEVSITEVDPR.	625

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g02673	624	ProSiteProfiles	Gnk2-homologous domain profile.	90	197	IPR002902	-
	Seca5g02673	624	MobiDBLite	consensus disorder prediction	603	617	-	-
	Seca5g02673	624	FunFam	cysteine-rich receptor-like protein kinase 10	382	583	-	-
	Seca5g02673	624	ProSitePatterns	Protein kinases ATP-binding region signature.	312	334	IPR017441	GO:0005524
	Seca5g02673	624	SUPERFAMILY	Protein kinase-like (PK-like)	290	599	IPR011009	-
	Seca5g02673	624	Pfam	Salt stress response/antifungal	103	194	IPR002902	-
	Seca5g02673	624	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	126	623	-	-
	Seca5g02673	624	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	427	439	IPR008271	GO:0004672\|GO:0006468
	Seca5g02673	624	CDD	STKc_IRAK	312	578	-	-
	Seca5g02673	624	Gene3D	Phosphorylase Kinase; domain 1	265	381	-	-
	Seca5g02673	624	ProSiteProfiles	Protein kinase domain profile.	306	586	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca5g02673	624	Gene3D	-	92	197	IPR038408	-
	Seca5g02673	624	FunFam	Cysteine-rich receptor-like protein kinase 10	267	381	-	-
	Seca5g02673	624	SMART	serkin_6	306	580	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca5g02673	624	FunFam	Cysteine-rich receptor-like protein kinase 10	97	197	-	-
	Seca5g02673	624	Gene3D	Transferase(Phosphotransferase) domain 1	382	583	-	-
	Seca5g02673	624	MobiDBLite	consensus disorder prediction	603	624	-	-
	Seca5g02673	624	Pfam	Protein kinase domain	307	573	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g02673	Seca-Chr5	75020705	75024959	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g02673	107	624	Receptor kinase-like Gene Family	AT4G21410	50.380	2.98e-175	512

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Seca5g02673		Pkinase	3.2e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g02673	-		-	gmx:100782266	739.184