Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02669 ATGTCGAAGAAGAAGTCTAGCTTAGGTCGCCAAAAGATCCCAATTGAGAAAATACCCAAAAAAAGTCATCTTCAAGTTACATTCTCAAAGCGTCGTTCAGGACTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGTAGAGATCGCAATTGTTGTTTTCTCCCCTGCTGATAAGGCATTCTCTTTTGGCCATCCAGAAGTTGAGTCCATCGTTGATCGTTATTTGACTCGAAACCCTCCACAAGAGTCTAGTGCTCACCAAATTGTTGAGGCACATAGAAATGCTAATGTGTGTGATCTCAACATGCAGCTGACTCAGCTTCTTAGCCATTTGGAGGTTGAAAAGAAACAAGGAGAAGAGTTAGACCATGTGAGGAGAGCAAGGCAAAGGCAATTTTGGTGGGAGAGCCCAGTTGATGAGCTTGGCTTGAATGAATTGCTACAATTAAAGGCTTCTATTGAGGACTTGAAAAAGAATTTAGGAAAATTTTCCAGCAAATTCATGATGGAGCAATCAACCATATCTTCAACAAATGTTATTGGGACTAATGGAATTGGACGTTTTGATGCCTTTGAGAACAAATCTGGTGGTGGTGCTAGGACTAACATTTCTTCCACAATTCCTAATTCTTATAATTATCTCAGTTTTCGACATGGCCATGGGTATCTTTGA 678 0.4071 MSKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESIVDRYLTRNPPQESSAHQIVEAHRNANVCDLNMQLTQLLSHLEVEKKQGEELDHVRRARQRQFWWESPVDELGLNELLQLKASIEDLKKNLGKFSSKFMMEQSTISSTNVIGTNGIGRFDAFENKSGGGARTNISSTIPNSYNYLSFRHGHGYL. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02669 225 SUPERFAMILY SRF-like 9 85 IPR036879 GO:0003677|GO:0046983
Seca5g02669 225 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Seca5g02669 225 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Seca5g02669 225 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Seca5g02669 225 PANTHER MADS BOX PROTEIN 10 163 - -
Seca5g02669 225 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Seca5g02669 225 Gene3D - 89 182 - -
Seca5g02669 225 Coils Coil 148 168 - -
Seca5g02669 225 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Seca5g02669 225 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Seca5g02669 225 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Seca5g02669 225 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Seca5g02669 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02669 Seca-Chr5 74868665 74869342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02669 7 223 Type I MADS-box Gene Family AT2G24840 45.455 1.46e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca5g02669 SRF-TF 3.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02669 - - gmx:100793705 329.717