Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02668 ATGTTGAAGAAGAAGTCTAGCTTAGGTCGCCAAAAGATTCCAATTGAGAAAATACCCAAAAAAAGTCATCTTCAAGTTACATTCTCAAAGCGTCGTTCCGGACTCTTCAAGAAAGCTAGTGAGCTTTGCACTCTTTGTGGTGTAGAGATCGCAATTGTTGTTTTCTCCCCTGCTGATAAGGCATTCTCTTTTGGCCATCCAGAAGTTGAGAACATCATTGATCGTTATTTGACTCGAAACCCTCCACAAGAGTCTAGTGCTCACCAAATTGTTGAGGCACATAGAAATGCTAATGTGCGAGATCTCAACATGCAGCTGACTCAACTTCTTAACCATTTAGAGGTTGAAAAGAAACAAGGAGAAGAGTTAGATCATGTGAGGAGAGCAAGGCAAAGGCAATTTTGGTGGGAGAGCCCAGTTGATGAGCTTGGCTTGAATGAATTGCTAAAACTAAAGGCTTCTATTGAGGACTTGAAAAGGAATTTAGGAAAACTTGCCAGCAAATTCATGATGGAGCAATCAACCATATCTTCAACAAATGTTATTGGGGCTAATGGAACTGGACGATTCGATACCTTTGAGAACAAATCTGGTGGTGGTGTTGGGATTAACATTTCTTCCACAGTTCCTAATTCCTATAATTATCTCGGTTTTCGACATGGCCATGGTGAGTTATGCACCCTTTGTGGTGTAGAGATCGCAATTGTTGTTTTCTCCCCTGCTGATAAGGCATTTTCTTTTGGCCATCCAGAAGTTGAGTCCATCATTAATCGTTATTTGACTCGAAACCCTCCACAAGAGTCTAGTGCTCACCAAATTGTTGAGGCACATAGAAATGCTAATGTTCATGATCTCAACATGCAGCTGACTCAGCTTCTTAGCCATTTGGAGGTTGAGAAGAAACAAGGAGAAGAGTTAGACCATGTGAGGAGAACTAGGCAGAGGCAATTTTGGTGGGAGAGCCCAATTGATGAGCTTGGCTTGAATGAATTGCTAAAGTTAAATGCTTCTATTGAGGAAATGAAAAAGAATTTAGGAAAACTTGCTAGGAAATTCATGACGGAGCAATTCAACATTTCTTCAACAAATGTTATTGGGGCTAATGGAATTGGACATTTTGATGCCTTTGAGAACAAATCTGGTGGTGGTGTTGGGATTAACATTTCTTCCACAGTTTCCAATTCCTATAATTATCTCGGTTTTTGA 1206 0.4038 MLKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVENIIDRYLTRNPPQESSAHQIVEAHRNANVRDLNMQLTQLLNHLEVEKKQGEELDHVRRARQRQFWWESPVDELGLNELLKLKASIEDLKRNLGKLASKFMMEQSTISSTNVIGANGTGRFDTFENKSGGGVGINISSTVPNSYNYLGFRHGHGELCTLCGVEIAIVVFSPADKAFSFGHPEVESIINRYLTRNPPQESSAHQIVEAHRNANVHDLNMQLTQLLSHLEVEKKQGEELDHVRRTRQRQFWWESPIDELGLNELLKLNASIEEMKKNLGKLARKFMTEQFNISSTNVIGANGIGHFDAFENKSGGGVGINISSTVSNSYNYLGF. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02668 401 Coils Coil 99 123 - -
Seca5g02668 401 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Seca5g02668 401 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Seca5g02668 401 Coils Coil 331 351 - -
Seca5g02668 401 Coils Coil 148 168 - -
Seca5g02668 401 SUPERFAMILY SRF-like 224 268 IPR036879 GO:0003677|GO:0046983
Seca5g02668 401 Gene3D - 272 365 - -
Seca5g02668 401 Gene3D - 88 184 - -
Seca5g02668 401 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Seca5g02668 401 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Seca5g02668 401 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Seca5g02668 401 PANTHER MADS BOX PROTEIN 224 346 - -
Seca5g02668 401 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Seca5g02668 401 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Seca5g02668 401 SMART madsneu2 198 250 IPR002100 GO:0003677|GO:0046983
Seca5g02668 401 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Seca5g02668 401 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Seca5g02668 401 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 224 247 IPR002100 GO:0003677|GO:0046983
Seca5g02668 401 Gene3D - 222 271 IPR036879 GO:0003677|GO:0046983
Seca5g02668 401 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02668 Seca-Chr5 74862551 74866246 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02668 224 370 Type I MADS-box Gene Family AT5G60440 45.098 6.11e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca5g02668 SRF-TF 8.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02668 - - gmx:100793705 335.495