Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02663 ATGAGTGACAATAGTAATGCTACAGATGTTGATCAATTCAATGAGATGTTAAGGAACTTGCTAGAGAGCCTCGCAAGCAATGCTTCATCAGGGGACTCCCTGCATAAATTTGCTACAGGAAATGTAAGGTCAGAATTTCAAACTATATTTGGTCTTGTGCAGTGTACACCTGATTTGTCAGAGCTAGATTTAAATGCATGTTTGATTGGGGCTATCTTAGAAATCCCACAATGTTGTGATAGCAAGAAAGGTGGTAGAATTCTACGACCTAGCTGTAACTTCAGATATGAGACATACCCTTTCTATGATTCTACCAATATTATTATTGCAGCACCACCAACAGGGTCTGCTCTTCGTCCCTCATCCACACAAGGGAGGAGCAACACACCACGAACGATAATTGTAATAGTTGTACCAATTATTGCCTGTGTCACATTAGTCATCCTTACACTACAACAATTTTGGGATATTAGAGCACTGTCTGAACTGACTAGTTTCAACTCATTCCCATTTGAAGGTGAAAATGGTGATGAAATTAGACCAACTGAGACGTGGCAATTAGATTTCGCCACCATCATGGCCGCTACTAATAACTTTTCTCATGCAAGGAAGTTAGGACAAGGAGGATTTGGATCTGTTTACAAGGGTAAACTCTTTGATGGTCAGGAAGTTGCAGTCAAAAGGTTGTCTAGGAATTCCATGCAAGGAGATACAGAGTTTAAGAATGAAGCGGTGTTAGTGGCCAAGCTTCAGCACCGAAATTTAGTTAGGCTACTAGGTTTCTGTTTGGAAAGAAAGGAAAGGCTACTGGTGTATGAGTTTGTTTCCAATAAAAGCCTTGATTTCTTCATATTTGATCAAATAAAACGTGCACAATTGGATTGGGAAAGGCGATACAAAATCATAGGAGGCATTGCTAGAGGTCTTCTTTACCTTCATGAGGATTCACGTTTGAGGATTGTTCATCGTGATCTCAAAGCAAGCAACATTCTTTTAGATGAAGATATGACCCCTAAGATATCAGATTTTGGCATGGCAACACTATGCCACAAAACCCCTTTTACCGCGCCCCATTTACCACGGTTGTTTTAA 1092 0.402 MSDNSNATDVDQFNEMLRNLLESLASNASSGDSLHKFATGNVRSEFQTIFGLVQCTPDLSELDLNACLIGAILEIPQCCDSKKGGRILRPSCNFRYETYPFYDSTNIIIAAPPTGSALRPSSTQGRSNTPRTIIVIVVPIIACVTLVILTLQQFWDIRALSELTSFNSFPFEGENGDEIRPTETWQLDFATIMAATNNFSHARKLGQGGFGSVYKGKLFDGQEVAVKRLSRNSMQGDTEFKNEAVLVAKLQHRNLVRLLGFCLERKERLLVYEFVSNKSLDFFIFDQIKRAQLDWERRYKIIGGIARGLLYLHEDSRLRIVHRDLKASNILLDEDMTPKISDFGMATLCHKTPFTAPHLPRLF. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02663 363 Pfam Salt stress response/antifungal 5 99 IPR002902 -
Seca5g02663 363 ProSiteProfiles Protein kinase domain profile. 199 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02663 363 Gene3D Transferase(Phosphotransferase) domain 1 275 359 - -
Seca5g02663 363 Gene3D Phosphorylase Kinase; domain 1 173 274 - -
Seca5g02663 363 Pfam Protein kinase domain 200 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02663 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 320 332 IPR008271 GO:0004672|GO:0006468
Seca5g02663 363 FunFam Cysteine-rich receptor-like protein kinase 10 164 274 - -
Seca5g02663 363 FunFam Cysteine-rich receptor-like protein kinase 10 1 101 - -
Seca5g02663 363 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 29 350 - -
Seca5g02663 363 SUPERFAMILY Protein kinase-like (PK-like) 182 353 IPR011009 -
Seca5g02663 363 ProSitePatterns Protein kinases ATP-binding region signature. 205 227 IPR017441 GO:0005524
Seca5g02663 363 SMART serkin_6 199 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02663 363 ProSiteProfiles Gnk2-homologous domain profile. 1 101 IPR002902 -
Seca5g02663 363 FunFam Os07g0541700 protein 275 357 - -
Seca5g02663 363 Gene3D - 1 101 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02663 Seca-Chr5 74805413 74809915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02663 1 348 Receptor kinase-like Gene Family AT4G05200 51.515 3.56e-111 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g02663 Pkinase 1.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02663 - - gmx:113000773 456.447