Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02658 ATGCAGGGCTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGAAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAGAAACTGCAAAAGAAAATGGTTGGGTCCAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATGCATCCATGGTTGATCAAAACAGCAACAAGTGCGAATAAGTTTTACACTTCACAGCAGCTAAAGCAGCTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCTTTCATGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGTCGCAAACTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAGTGGAAAAAGGATGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGGTTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTATAGCTTGTCCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAAGCTATTGCAAGGGATTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGAAAAAGGCTCAATGGAGGAAGATAAGTACCTCAGAACCACATGGAAAGAATGGGTTTCCAACATAATTTTCAGTGAGGATTTTGTGGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGAATGACGAGTCTAAAGCAATCCATATGATCATGAAGAATGAAAAAGCTTCAAAAAACTAA 915 0.3956 MQGLNMLRKITSGFIDVYESGNSDKLPGLKIYTLLMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSMHPWLIKTATSANKFYTSQQLKQLEKFKSDFRVGSKVRFILNLIFHVVKEEKVLIFCRKLAPMKLLVQLFEECFKWKKDGEILLLYGEQDLFERGKVVDKFEDPCGVSKVLLASIIACPEGISLTAASRLIFLDSEWNPSKIKQAIARDFRPGQEKMVYVYQLLEKGSMEEDKYLRTTWKEWVSNIIFSEDFVENPSQWQAEKIEDDILREMVENDESKAIHMIMKNEKASKN. 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02658 304 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 110 271 IPR001650 -
Seca5g02658 304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 288 IPR027417 -
Seca5g02658 304 SMART helicmild6 135 224 IPR001650 -
Seca5g02658 304 CDD SF2_C_SNF 99 235 - -
Seca5g02658 304 Pfam Helicase conserved C-terminal domain 107 222 IPR001650 -
Seca5g02658 304 Gene3D - 27 304 IPR027417 -
Seca5g02658 304 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 303 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02658 Seca-Chr5 73845950 73846864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02658 153 242 RAD5 or RAD16-like Gene Family AT5G05130 39.560 2.88e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02658 K10875 - gmx:100781856 432.95