Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02648 ATGGCTTTCACACTAGACAAGTGTGAGGAGAATAAGGTGTTCACTTTTGAGTCTCAGAAGTCAGTGCCAGCACCCTTCCTGACAAAGAAATACCAGCTTGTTGATGACCCTAGGACTGATCACATTGTGTCTTGGGGTGAAGATGAAACTATATTTGTTGTATGGAGACCCCCTGAATTTGCTAGAGATCTTCTTCCAAACTATTTCAAACATAACAACTTCTCAAGCTTTGTTAGGCAACTCAATACCTATGGTTTCAAGAAGGTAGTTGCTGATAGGTGGGAGTTTGCAAATGAGTTCTTCAAAAAAGGAGCTAAGTATCTTTTATGTGAAATCCATAGGAGAAGAACACCTCAGCATAATCACCAACTCTACCATGATCAACCACCACAGATTCTTCAGCAAGATGAAAATCTATGTTAG 423 0.3995 MAFTLDKCEENKVFTFESQKSVPAPFLTKKYQLVDDPRTDHIVSWGEDETIFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEFFKKGAKYLLCEIHRRRTPQHNHQLYHDQPPQILQQDENLC. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02648 140 FunFam Heat stress transcription factor B-4 18 116 - -
Seca5g02648 140 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 123 IPR027725 -
Seca5g02648 140 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Seca5g02648 140 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g02648 140 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g02648 140 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g02648 140 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g02648 140 Gene3D - 17 116 IPR036388 -
Seca5g02648 140 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g02648 140 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02648 Seca-Chr5 73127138 73127947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02648 20 132 HSF AT1G46264 76.471 8.08e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca5g02648 HSF_DNA-bind 4.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02648 K09419 - gmx:100806150 263.462