Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca5g02643 | ATGATCACTGGGGAGAGACAGGCTGCAAGAATTAGAGGCTTATACATTCAAACAATTTTGAGACAAGATGTGACCTTTTTTTATAAGGAAACTAATACTGGAGAGGTTATTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGCGAGAAGGTACAATTAATGAACCACCATACATGTCCTAAATCATCAACATTAAAGAAAGTTTTTAACGTCAATTTTGTTTGTTTACTATTTATTTAA | 252 | 0.3413 | MITGERQAARIRGLYIQTILRQDVTFFYKETNTGEVIGRMSGDTVLIQDAMGEKVQLMNHHTCPKSSTLKKVFNVNFVCLLFI. | 84 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca5g02643 | 83 | Pfam | ABC transporter transmembrane region | 2 | 58 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca5g02643 | 83 | Gene3D | ABC transporter type 1, transmembrane domain | 1 | 73 | IPR036640 | GO:0005524|GO:0016020 | |
Seca5g02643 | 83 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 1 | 58 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca5g02643 | 83 | PANTHER | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL | 1 | 58 | IPR039421 | - | |
Seca5g02643 | 83 | SUPERFAMILY | ABC transporter transmembrane region | 2 | 55 | IPR036640 | GO:0005524|GO:0016020 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca5g02643 | Seca-Chr5 | 73035905 | 73036156 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca5g02643 | 1 | 61 | Calmodulin-binding Proteins | AT2G36910 | 37.705 | 3.64e-10 | 52.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca5g02643 | K05658 | - | egr:104434397 | 105.145 |