Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02643 ATGATCACTGGGGAGAGACAGGCTGCAAGAATTAGAGGCTTATACATTCAAACAATTTTGAGACAAGATGTGACCTTTTTTTATAAGGAAACTAATACTGGAGAGGTTATTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGCGAGAAGGTACAATTAATGAACCACCATACATGTCCTAAATCATCAACATTAAAGAAAGTTTTTAACGTCAATTTTGTTTGTTTACTATTTATTTAA 252 0.3413 MITGERQAARIRGLYIQTILRQDVTFFYKETNTGEVIGRMSGDTVLIQDAMGEKVQLMNHHTCPKSSTLKKVFNVNFVCLLFI. 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02643 83 Pfam ABC transporter transmembrane region 2 58 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g02643 83 Gene3D ABC transporter type 1, transmembrane domain 1 73 IPR036640 GO:0005524|GO:0016020
Seca5g02643 83 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 58 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g02643 83 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 1 58 IPR039421 -
Seca5g02643 83 SUPERFAMILY ABC transporter transmembrane region 2 55 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02643 Seca-Chr5 73035905 73036156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02643 1 61 Calmodulin-binding Proteins AT2G36910 37.705 3.64e-10 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02643 K05658 - egr:104434397 105.145