Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02626 TACGCCACAGGGACCGTTAGCTATCCAGCGCCAATATTCGTTGTTGTTGTTGGTTCTTTCTTTCTCTCTCTCTCTCTTTTCTTTAATTTGTCTGTCTCTATATGTGTGTGTGGCTTTGTGTCTAATTTTAATTTTAACTCTCACCTTATAAACCCAACAAACAAACCCAACCTTTTTTTTGAACTCACAACAGAAGAAGCAGTGATCCTTAGGACTCTTTCTCTGTCTCTCACAAAAATGGAAAATGGTTGCTTCTCTTCCCCTCGACGTGATTTTCCTGCAGGTCTGCGAGTTCTTGTTGTGGATGATGATCCAACATGGCTCAAGATCCTTGAAAAGATGCTCAAGAAGTGTAACTATGAAGTGACTACGTGTTGTTTAGCAAGACATGCTCTAAACTTGCTTCGTGAAAGGAAGGATGGATATGATATAGTGATCAGCGATGTAAACATGCCTGACATGGATGGTTTCAAACTTCTTGAGCATGTTGGACTAGAGATGGATCTTCCTGTCATTATGATGTCAGTGGATGGAGAAACAAGCAGGGTGATGAAAGGAGTTCAGCATGGAGCTTGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGCGGAATATATGGCAACATGTCCTTAGAAAAAGGATACACGAGGCTAAAGAATTTGAAAGTTTTGAGAGTTTTGAGAGCATTCACTTAATGAGGAATGGATCAGAGCAGTCTGAAGATGGGAACCTGTTTGCTTTAGAAGATATGACATCAACCAAGAAAAGAAAAGATGTAGATAGCAAACATGATGACAAGGAATTTTTAGATCCATCTTCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGATTTGACAAAGTTGGTCCCAAGAAAATACTAGATTTGATGAATGTTCCATGGCTGACAAGAGAGAATGTTGCTAGCCACTTGCAGAAATACCGGCTTTACTTGAGTAGGCTTCAGAAAGAAAACGAACAGAAATCTTCCTCAAGTGGAATGAAGCATTCTGATTTACCTTTAAAAGATGTAGGAAGTTTTGGTGTACAGAACTCAGTAAACAAGCAACAAAATGATGTTTCAATTGATAGCTACAACTATTCAGATGGAACATTACCACTTCAGAATGTGGAAACTAAATGTCATGAAGGTAGTCCCAAGGGAATTGTTTCACAGTCCACCACTGCAGAAAAAGGAAGAGCTTTGACTGGTAACATTACTGATACAAAGATGAGGGAGAGTCTAAGGATGGGACTTAATCAACCTTTTGCCCCTCTTGAGACAGAAGGAAAGCATGCAGTGTTTGATTGCACCATGCCAACACGGTACTCATGGACTGAAGTTCCAGAAATGCAACTCAAAGAAGAACACAAGTCACTTGTTCATTTAGAGGATAGCTTCAGCCAGTTACCATTACATGGTAAGCAGCAACACCACATCCAAGTTGATCAATCACAATCAATTGCTTCAATTAGTTCCACTCCCTCTATAACAGAGGAAGAGGTTGCTGCTTGTATAGAAACAAAACCTTTGTTTGCTGATTACAAGAGTGATTACACCAGTTCTGTGAGTTCAATAGGGAGTGTAGTTGACACCTTTCCTATTCAACCTGGAAGCCTTATGATGAATGATCCACCTTCAGCACCTATTTCCACTACAAATTTGGGCTTGAAAACACAGGGATCTAACCTCAGTTGCATTTCTGACCTGGAATTTTACCAAAGAAACCTACTGTTGGGAGGTGATGCAACTTCTGCACCTTTGGATGAGGACTTATATTTCTATTGGCTACAAGGTGAATACTATAATATGAACTTGGGTGTGCAGAATGTAGGGATGCCTGAGTATTATGATCCAGGTCTTATTACAGAAGTTCCAACCCACTTATATGATTTAGCAGATTATTCAGTAATAGATCAAGGTCTATTCATAGCATAA 1983 0.3949 YATGTVSYPAPIFVVVVGSFFLSLSLFFNLSVSICVCGFVSNFNFNSHLINPTNKPNLFFELTTEEAVILRTLSLSLTKMENGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEAKEFESFESFESIHLMRNGSEQSEDGNLFALEDMTSTKKRKDVDSKHDDKEFLDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENEQKSSSSGMKHSDLPLKDVGSFGVQNSVNKQQNDVSIDSYNYSDGTLPLQNVETKCHEGSPKGIVSQSTTAEKGRALTGNITDTKMRESLRMGLNQPFAPLETEGKHAVFDCTMPTRYSWTEVPEMQLKEEHKSLVHLEDSFSQLPLHGKQQHHIQVDQSQSIASISSTPSITEEEVAACIETKPLFADYKSDYTSSVSSIGSVVDTFPIQPGSLMMNDPPSAPISTTNLGLKTQGSNLSCISDLEFYQRNLLLGGDATSAPLDEDLYFYWLQGEYYNMNLGVQNVGMPEYYDPGLITEVPTHLYDLADYSVIDQGLFIA. 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02626 660 PANTHER TWO-COMPONENT RESPONSE REGULATOR 96 368 IPR045279 GO:0009736
Seca5g02626 660 SMART REC_2 96 208 IPR001789 GO:0000160
Seca5g02626 660 Pfam Myb-like DNA-binding domain 280 330 IPR001005 -
Seca5g02626 660 FunFam Two-component response regulator 274 337 - -
Seca5g02626 660 FunFam Two-component response regulator 96 258 - -
Seca5g02626 660 Pfam Response regulator receiver domain 98 207 IPR001789 GO:0000160
Seca5g02626 660 SUPERFAMILY Homeodomain-like 276 335 IPR009057 -
Seca5g02626 660 SUPERFAMILY CheY-like 95 229 IPR011006 -
Seca5g02626 660 CDD REC_typeB_ARR-like 98 212 - -
Seca5g02626 660 Gene3D - 96 270 - -
Seca5g02626 660 ProSiteProfiles Response regulatory domain profile. 97 212 IPR001789 GO:0000160
Seca5g02626 660 NCBIfam myb-like DNA-binding domain, SHAQKYF class 278 331 IPR006447 GO:0003677
Seca5g02626 660 Gene3D - 274 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02626 Seca-Chr5 72869856 72874441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02626 92 344 Response Regulator Gene Family AT2G25180 56.250 5.23e-82 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca5g02626 Response_reg 1.9e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02626 K14491 - gmx:100797421 982.63