Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02623 ATGGGTTTTTCTTCTCTCTTTCTAGTTATACTTCCTCTGTTAACATCATGTGCAGTTTGCCAAGTTGAAGAATTTGTCAGCATTGACTGTGGAGGTACAAGTAACTACACTGATTCAAGCACAGGGCTTGCATGGATTTCAGACTCTGGGGTCATGAAACATGGAAAGATAGTGGAAGTACAAAATCCTAATGGAAACAAGGTTCAGTATCAGAGACGCAGAGATTTTCCCATAGACAGCAGAAAATACTGTTATACACTTAACACAGAGGAGAGAAGAAGGTATCTGATACGAGCAACGTTTCAGTATGGTAGTTTGGAAAATGGAGATACATACCCTCAGTTTCAACTCTACTTAGATGCAACCAAATGGGCTACTGTGTCAATATATGATGCTTCAAGGGTATATGTAAAGGAAATGATCTTCAGGGCACCCTCAAACTCTATTGATGTTTGTTTGTGCTGTGCTACAACTGGTTCTCCCTTCATATCTACCCTTGAGTTAAGGCCCTTGAATGTTTCTATGTATGCCACTGATTTTGAGGACAATTTCTTCTTGAAAGTAGCTGCAAGGACTAATTTTGGTGCCCCAAGTGAGGAGTCTGTCAGGTATCCAGATGATCCATATGATAGAATTTGGGAGTCTGATCTTATTAGAAGACAGAATTATCTTGTTGGGGTGGCAACAGGGACAAAAAGAATCAACACAACAAGGAACATAGAAATAGGGACAAGAGAATACCCACCTGTTAAAGTGATGCAAAATGCAGTTGTTGGCACAGAAGGAGTACTTAGCTACAGACTAAACCTGGAAGACTTCCCTGGAAATGCTAGAGCTTATGCATATTTCGCGGAGATTGAAGATCTGGGTAAGAATGAGACTAGGAAATTCAAATTGGAGCAACCTTATATACCTGACTACAGCAATGCAGTGGTGAACATTGCTGAGAATGCTAATGGGAGCTACACTCTTTATGAACCAAGTTACATGAATGTAAGTCTGGAATTTGTTCTTTCATTCTCCTTTGTTAGGACCCGGGATTCTACTCAAGGACCTCTTCTGAATGCAATGGAAATAAGCAAATATGTACAAATTGCTTCAAAGACTGACAGGCAAGATTATTTTTATTTTACAGCAAATTTTGTAAATACATTTGGCTCCTTGTCTGCTGATGTTGTCCTGAAGAATGAAGGTGATCCTTGTGTTCCAACTCCCTGGGAGTGGGTTAATTGTAGTACTACTACACCTCCAAGAATTACAAAGATAAACCTGTCAAGAAGGAATGTGAAGGGTGAAATCCCACGTGAGCTCAACAACATGGAAGGATTGACAGAATTGTGGTTAGATGGCAACTTGCTTACAGGACAACTACCTGACATGAGCAATCTTATCAATCTAAAGATTGTGCATCTAGAGAACAACAAATTGACTGGTCCACTACCATCTTACCTGGGTAGCTTGCCAAGTTTACAAGCACTGTTCATACAGAATAACTCATTTACTGGGGAAATACCAGCAGGATTATTATCTGGAAAAATCATTTTCAACTATGATGATAATCCTGGACTACATAGAGGGAACAAAAAGCATTTTCAGTTGATGCTAGGAATTTCCATTGGAGTACTAGTGATTCTATTAATATTGTTCTTAGCAAGTTTAGTGCTATTGTGTAATCTGCGGAGAAAGGCATCTCAACAGAAACATGATGAAAAAGGCATATCAGGACGCAGCACTAAACCTTTAACTGGATATTCATTTGGTCCGGGTGGGAGTTTAATGGATGAAGGTACTGCATACTATATTACACTCTCAGAATTGAAAGAAGCTACAAATAATTTTTCAAAGAAAATTGGCAAAGGAAGTTTTGGATCTGTCTATTATGGGAAAATGAGAGATGGAAAAGAGGTGGCAGTTAAGACTATGACTGATCCTTCCAGCCATGGGAATCAGCAATTTGTAAATGAGGTAGCCCTCCTTTCAAGAATTCATCACAGAAACTTGGTTCCTCTAATTGGATATTGTGAAGAAGAATATCAGCATATTTTGGTTTATGAGTACATGCACAATGGCACTTTACGGGATCACATTCATGATTGTTCGAATCCGAAGCCATTAGACTGGCTAGCTCGTCTTCGAATTGCAGAAGATGCTGCTAAAGGTCTTGAATACTTACACACAGGATGCAATCCTAGTATCATTCACAGAGATGTAAAGACAAGTAATATTCTCCTAGACATCAATATGAGAGCAAAAGTGTCAGACTTTGGACTCTCAAGACTAGCTGAAGAAGATTTAACCCATATATCAAGTGTTGCACGGGGAACTGTGGGCTACCTGGATCCTGAGTACTATGCCAATCAGCAATTGACTGAAAAGAGTGATGTGTACAGTTTTGGAGTTGTTCTGTTGGAACTGATATCAGGAAGAAAGCCTGTGTCATCAGAAGATTATGGTCCTGAAATGAATATCGTTCATTGGGCAAGATCCTTAATTCGGAAAGGAGATGTGATAAGCATCATGGATCCTTCCCTAGTTGGGAATGTCAAAACTGAGTCAATTTGGAGGGTTGCTGAAATTGCCATGCAATGTGTAGAACAACATGGTGTCTCTAGGCCAAGGATGCAAGAAGTCATCTTGGCTATACAAGATGCTTCTAAGATTGAAAAAGGAATAGAAAACCAGCTAAAATTGTCATCTTCAGGTAGTTCAAAACCATATTCCTCAAGGAAAACTTTACTTACAAGCTTTCTTGAAATTGAGAGCCCTGACTTGTCAAATGGTTGCCTTCCATCAGCAAGATAA 2802 0.394 MGFSSLFLVILPLLTSCAVCQVEEFVSIDCGGTSNYTDSSTGLAWISDSGVMKHGKIVEVQNPNGNKVQYQRRRDFPIDSRKYCYTLNTEERRRYLIRATFQYGSLENGDTYPQFQLYLDATKWATVSIYDASRVYVKEMIFRAPSNSIDVCLCCATTGSPFISTLELRPLNVSMYATDFEDNFFLKVAARTNFGAPSEESVRYPDDPYDRIWESDLIRRQNYLVGVATGTKRINTTRNIEIGTREYPPVKVMQNAVVGTEGVLSYRLNLEDFPGNARAYAYFAEIEDLGKNETRKFKLEQPYIPDYSNAVVNIAENANGSYTLYEPSYMNVSLEFVLSFSFVRTRDSTQGPLLNAMEISKYVQIASKTDRQDYFYFTANFVNTFGSLSADVVLKNEGDPCVPTPWEWVNCSTTTPPRITKINLSRRNVKGEIPRELNNMEGLTELWLDGNLLTGQLPDMSNLINLKIVHLENNKLTGPLPSYLGSLPSLQALFIQNNSFTGEIPAGLLSGKIIFNYDDNPGLHRGNKKHFQLMLGISIGVLVILLILFLASLVLLCNLRRKASQQKHDEKGISGRSTKPLTGYSFGPGGSLMDEGTAYYITLSELKEATNNFSKKIGKGSFGSVYYGKMRDGKEVAVKTMTDPSSHGNQQFVNEVALLSRIHHRNLVPLIGYCEEEYQHILVYEYMHNGTLRDHIHDCSNPKPLDWLARLRIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRLAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRKPVSSEDYGPEMNIVHWARSLIRKGDVISIMDPSLVGNVKTESIWRVAEIAMQCVEQHGVSRPRMQEVILAIQDASKIEKGIENQLKLSSSGSSKPYSSRKTLLTSFLEIESPDLSNGCLPSAR. 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02623 933 ProSiteProfiles Protein kinase domain profile. 611 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02623 933 Gene3D Transferase(Phosphotransferase) domain 1 687 902 - -
Seca5g02623 933 SUPERFAMILY L domain-like 401 509 - -
Seca5g02623 933 Pfam Protein tyrosine and serine/threonine kinase 613 878 IPR001245 GO:0004672|GO:0006468
Seca5g02623 933 Gene3D Phosphorylase Kinase; domain 1 591 686 - -
Seca5g02623 933 SUPERFAMILY Protein kinase-like (PK-like) 594 878 IPR011009 -
Seca5g02623 933 PANTHER OS07G0107800 PROTEIN-RELATED 459 884 - -
Seca5g02623 933 ProSitePatterns Protein kinases ATP-binding region signature. 617 639 IPR017441 GO:0005524
Seca5g02623 933 SMART serkin_6 611 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02623 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 732 744 IPR008271 GO:0004672|GO:0006468
Seca5g02623 933 MobiDBLite consensus disorder prediction 567 588 - -
Seca5g02623 933 Gene3D Ribonuclease Inhibitor 368 520 IPR032675 -
Seca5g02623 933 FunFam receptor-like serine/threonine-protein kinase NCRK 591 686 - -
Seca5g02623 933 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 687 894 - -
Seca5g02623 933 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 413 504 - -
Seca5g02623 933 Pfam Malectin-like domain 28 361 IPR024788 -
Seca5g02623 933 CDD STKc_IRAK 617 878 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02623 Seca-Chr5 72550625 72556179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02623 1 933 Receptor kinase-like Gene Family AT1G67720 69.477 0.0 1301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Seca5g02623 Malectin_like 8.7e-89 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02623 - - gmx:100807148 1643.63