Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02605 ATGGCCGGTCTGTTACCTTGCGCGCCGAATATAGTCTCTACTCCGTTCGGGAACTGGAGCAGCAAGAGCAGCAATCTCCTGCACCGACCTAACTCCCACTCTTTCTCCGGTTCGACCAGGCACTTTCTTCGCGGTTCGCTTACCGTTGCCCGGTTCGGATTTAAGCCCGGTTTCTTGCCCGAGCCGAATGGCGCCGAAGCCGTCATCAGCGAACTGTTTAGCCGAGCGGAGGGTCTTCTTTACACGATTGCCGATGCCGCCGTTTCTTCTTCCGACACGGTGGCAACCACCACCGCCAAACAGAACAACGATTGGCTTTCTGGAATCACCAATTACATGGAGACTGTTCTCAAGGTACTCAAGGACGGGTTGTCTACTTTGCATGTGCCTTATGCTTATGGTTTTGCAATTATACTGCTCACAGTTCTTGTAAAAGCTGCCACATTTCCATTGACAAAAAAACAGGTAGAATCTGCCTTGGCTATGCGATCTTTGCAACCTCAAATAAAGGCTATCCAGCAACGGTATGCTGGTGATCAGGAGAGAATTCAACTTGAAACTGCTCGGTTGTATAAGTTAGCCAACATCAATCCTCTAGCAGGATGCCTACCTACACTTGCAACAATACCTGTGTGGATTGGGCTATATCGAGCCCTTTCCAATGTAGCAGATGAAGGGCTCCTTACTGAAGGCTTCTTCTGGATACCTTCTCTTGCTGGTCCAACTACAGTTGCTGCTCGTCAAAATGGCAGTGGTATCTCTTGGCTTTTTCCTTTTGTGGATGGTCACCCTCCCCTTGGATGGTCAGATACATTGGCATACCTTGTCTTACCTGTTTTGCTGGTTGTCTCTCAGTACATCTCTGTCCAGATAATGCAGTCATCACAGGCTAATGATCCCAACATGAAGAGTTCTCAAGCCTTAACCAAGTTCCTTCCATTAATGATTGGTTACTTTGCTCTTTCAGTTCCTTCTGGTCTTAGCCTTTACTGGTTAACAAATAATATATTGAGCACTGCACAACAAGTATGGCTTCAAAAGTTAGGAGGTGCAAAAAATCCTGTGAGGCAAGTTCAAGATGATAACATGAAAGATAATCTAATACAGATTCAGAAGTCAGTACCTAAAGTAAATTCCACAAAAGCGGAAGAAACCAGACTAGGCGAGAAGACATCAGAGGGACCACAGCCTGGTGAAAGATTTAGGCAAATAAAGGAGCAAGAGGCAAGGAGAAAACAGCAGAGAGAAGAAGAAAAAAGGAAAGCTGAGGAAGCGGAAGCTAAAGCAACACATGAGAAAACAATTGATGGGGGAAATCAAGCTGGAGGTGATTCAGTTGTTGAAAAATCTCAATCTGTGGCTGCTAATACTGATCCATCTATATCTGGAGTAGTAAATGGTAATTCATTAAGCAAGGACTTAGAGGGAAATCAGAATTCTACATCTACATCTGAGACAGAAAATAATGAAGGTTCTTCTCATTTCAACGTTGTTGAAATAAACGAGAAAAGTCTAGACAAGGTATTATTGCACAAATGA 1539 0.4444 MAGLLPCAPNIVSTPFGNWSSKSSNLLHRPNSHSFSGSTRHFLRGSLTVARFGFKPGFLPEPNGAEAVISELFSRAEGLLYTIADAAVSSSDTVATTTAKQNNDWLSGITNYMETVLKVLKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESALAMRSLQPQIKAIQQRYAGDQERIQLETARLYKLANINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTVAARQNGSGISWLFPFVDGHPPLGWSDTLAYLVLPVLLVVSQYISVQIMQSSQANDPNMKSSQALTKFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVWLQKLGGAKNPVRQVQDDNMKDNLIQIQKSVPKVNSTKAEETRLGEKTSEGPQPGERFRQIKEQEARRKQQREEEKRKAEEAEAKATHEKTIDGGNQAGGDSVVEKSQSVAANTDPSISGVVNGNSLSKDLEGNQNSTSTSETENNEGSSHFNVVEINEKSLDKVLLHK. 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02605 512 NCBIfam membrane protein insertase YidC 133 347 IPR028055 -
Seca5g02605 512 MobiDBLite consensus disorder prediction 444 498 - -
Seca5g02605 512 PANTHER OXA1 87 422 IPR001708 GO:0016020|GO:0032977
Seca5g02605 512 CDD 5TM_YidC_Alb3 134 347 IPR047196 -
Seca5g02605 512 MobiDBLite consensus disorder prediction 382 433 - -
Seca5g02605 512 MobiDBLite consensus disorder prediction 370 498 - -
Seca5g02605 512 Coils Coil 404 435 - -
Seca5g02605 512 Pfam 60Kd inner membrane protein 133 347 IPR028055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02605 Seca-Chr5 72010291 72023033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02605 69 419 Chloroplast and Mitochondria Gene Families AT2G28800 57.627 1.42e-136 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02605 K03217 - gmx:100802546 790.03