Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02598 ATGGCAATTCCTCTCTCATTTATGCTACTCTTGCTATTTCTTGTACCTTCCTTCATTTGCTCTTCCCCACTTCAAGATCCTGAATTAGTAGTTGAAGAAGTACAAAAGAAAATTCTTTTGTGTTTTTTTTATTGCAGGAGCATTAATGCCTCAAGGAGAAACTTAGCATTTCTTTCTTGTGGTACTGGCAACCCTATTGATGATTGTTGGAGGTGTGACCCCAATTGGGAAAAGAATCGCAAGAGTTTAGCTGATTGTTCTATTGGTTTTGGTAAGCATGCAATTGGAGGCAGGGATGGTAAAATATATGTGGTAACTGACCCTGGTGATCACCCTGTGAACCCAAAGCCAGGAACTTTAAGATATGGTGTTATCCAAGAAGAGCCATTGTGGATCATATTCAAGCGTGACATGGTGATTAAGCTCAAGCAAGAGCTTATGATGAATTCTTTCAAAACTATTGATGGTAGAGGTGCAAATGTGCACATTGCTGGTGGACCTTGTATTACTATACAATTTGTGACTAACATTATCATTCATGGGATTAATATTCATGATTGCAAAAGGGGAGGGAATGCCTATGTGAGGGATTCCCCTACTCATTATGGTTTTAGGACTCTTTCAGACGGTGATGGGGTGTCAATTTTTGGTGGAAGCCATGTTTGGGTGGACCATTGTTCTCTCTCCAATTGCCGTGATGGACTAATTGATGTCATTCATGGATCTACAGCTATCACCATCTCCAACAATTATTTGACACACCATAACAAGGTCATGCTTTTGGGACATAGTGATTCTTTTACTAGAGACAAGAATATGCAAGTCACCATTGCTTTTAACCATTTTGGAGAAGGACTAGTGCAGAGAATGCCAAGATGCAGGCATGGATACTTTCATGTGGTGAACAATGACTACACTCAATGGCAAATGTATGCTATAGGAGGGAGTGCTGCTCCAACTATTAACAGCCAAGGCAATAGATTTCTTGCTCCCAATGACATGACATTCAAAGAGGTCACAAAGAGGGAGAATGCACCACAGAGCCAATGGAAGAAGTGGAATTGGAGGTCTTCAGGAGATTTGATGTTAAATGGTGCCTTTTTTACAGCATCAGGTGCAGGTGCATCTTCAAGCTATGCCAGAGCATCAAGTTTGGCAGCAAAATCATCTTCTTTGGTCAGTTCTATCACAGCATCAGCTGGATCACTGAACTGCAGAAAGGGATCACGCTGCTGA 1236 0.4126 MAIPLSFMLLLLFLVPSFICSSPLQDPELVVEEVQKKILLCFFYCRSINASRRNLAFLSCGTGNPIDDCWRCDPNWEKNRKSLADCSIGFGKHAIGGRDGKIYVVTDPGDHPVNPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGANVHIAGGPCITIQFVTNIIIHGINIHDCKRGGNAYVRDSPTHYGFRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDVIHGSTAITISNNYLTHHNKVMLLGHSDSFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTQWQMYAIGGSAAPTINSQGNRFLAPNDMTFKEVTKRENAPQSQWKKWNWRSSGDLMLNGAFFTASGAGASSSYARASSLAAKSSSLVSSITASAGSLNCRKGSRC. 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02598 411 SMART amb_all 137 334 IPR002022 -
Seca5g02598 411 SUPERFAMILY Pectin lyase-like 49 405 IPR011050 -
Seca5g02598 411 PRINTS Pollen allergen Amb family signature 353 377 IPR018082 -
Seca5g02598 411 PRINTS Pollen allergen Amb family signature 86 103 IPR018082 -
Seca5g02598 411 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Seca5g02598 411 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Seca5g02598 411 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Seca5g02598 411 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Seca5g02598 411 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Seca5g02598 411 PRINTS Pollen allergen Amb family signature 382 405 IPR018082 -
Seca5g02598 411 PANTHER PECTATE LYASE 18-RELATED 25 409 IPR045032 GO:0030570
Seca5g02598 411 Pfam Pectate lyase 143 328 IPR002022 -
Seca5g02598 411 Gene3D - 63 404 IPR012334 -
Seca5g02598 411 FunFam Pectate lyase 63 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02598 Seca-Chr5 71841274 71843918 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02598 5 411 Polysaccharide Lyase AT5G63180 75.243 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02598 K01728 - gmx:100816256 735.717