Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02592 ATGGAAGATAATGATTCTCATGCAATTACAATTAATACTTCTCATTATGAGTCTTTATCTACAGAAAATGACAGTGTTTGGTCATTGATTCCTGAGCTCAGTAAGAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGTAGGGTCAATACAACCATCACTTATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGCTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTACACTTTATACTTGGTACAAGGAATTCATCAAGTGGGAGATTCCTATTCCAGTGTATCTAATTCTTGATCGTAAAAACAAGAGAGATTTTGATGAAACACCATTGTCTATTCCTGGAGTTCCAAATCCCACCAGTGATGTCAAGCATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCTAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACGAGAGAGAATTCAAAGTATGAACATAAGACGTATATGGCTAAAGCTTTGAGGGAAAGCACTGGGATCCTTATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCTGGTACATTATTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCATGAAGTGCTGAAAGAATTAGATATAAAACAAAAGAAGGGAAATGATAAAAATCCAGAGAAAGCACAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAATAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTTGTTTTATAGATGTTTATGAGAGTGGGAATTCTGATAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAGAAACTGCAAAAGAAAATGGTTGGGTCCAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTGCGAATAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTTTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCTTTCGTTTGTTTGAGGAGTGTTTCAAATGGAAAAAGGATGGAGAAATTTTGTTACTTTATGGGGAACAAGACCCGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAGCTTGTAGTGAAGGTATCAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCCGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAATGGGTTTCCAGCTTGATTTTCAGTGAGGATTTTGTGGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGAATGACGAGTCTAAAGCAATCCATATGATCATGATGAATGAAAAAGCTTCAAAAAACTAA 1788 0.382 MEDNDSHAITINTSHYESLSTENDSVWSLIPELSKKMHDHQKKGFQFIWQNIVGSIQPSLMEVESERRGGCVISHTPGAGKTFLVIAFLVSYLKLFPDKKPLILAPKTTLYTWYKEFIKWEIPIPVYLILDRKNKRDFDETPLSIPGVPNPTSDVKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRENSKYEHKTYMAKALRESTGILILDEGHNPRSTRSRLRKGLMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVHEVLKELDIKQKKGNDKNPEKAQHLLETRARKFFLDDIANKIDSSDDEVRMQGLNMLRKITSCFIDVYESGNSDKLPGLQIYTLLMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKTATSANKFYTSQELNQLEKFKFDFRVGSKVRFILNLIFRLFEECFKWKKDGEILLLYGEQDPFERGKVIDKFEDPCGVSKVLLASITACSEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSMEEDKYRRTTWKEWVSSLIFSEDFVENPSQWQAEKIEDDILREMVENDESKAIHMIMMNEKASKN. 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02592 595 Gene3D - 414 591 IPR027417 -
Seca5g02592 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 263 IPR027417 -
Seca5g02592 595 CDD SF2_C_SNF 412 526 - -
Seca5g02592 595 SMART ultradead3 33 273 IPR014001 -
Seca5g02592 595 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 562 IPR001650 -
Seca5g02592 595 Gene3D - 6 303 IPR038718 -
Seca5g02592 595 Pfam Helicase conserved C-terminal domain 422 514 IPR001650 -
Seca5g02592 595 Pfam SNF2-related domain 61 365 IPR000330 GO:0005524|GO:0140658
Seca5g02592 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 579 IPR027417 -
Seca5g02592 595 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 62 261 IPR014001 -
Seca5g02592 595 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 7 593 IPR044567 GO:0080188
Seca5g02592 595 SMART helicmild6 430 515 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02592 Seca-Chr5 71651048 71652901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02592 444 533 RAD5 or RAD16-like Gene Family AT5G05130 41.758 7.97e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g02592 SNF2_N 2.6e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02592 K10875 - gmx:100811703 848.195