Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02589 ATGGAAACCATTACAATACCATGTGTTGGTATGGAATTTGATGATGTAGAAAAAGCATGGAAGTTTTGGGTTGAATATGGTAAAAGAGCTGGCTTTGGAGTTAGAAAACTTTACTTGAACAAAAGGAAGAAAGATGGATTCATTAGATCATGTAGATTTGTTTGTTGTAAGCAGGGTTATCGAAAAACGGACAAGAGATCCTTTTTGGTTAAAAATCCCAGGGCTGAGACAAAAATTGGATGCGAAGCAAGAATTGGACTTTGCGAAAAGAATGGGAAGCTTGTAATCCACGAGTTCGTGGAGGCCCATAACCACCCTTTACAGCTTGCAGAAACAATACATATGCTAGCATCACACCGTAAAATAACTACGGTTCAAGCATATGAAATTGAAATGGCAGAGGACTCTGGATTGGCGCAAAAGGCTTCATTTCAGCTTATGAGTGCACATGCAGGAAATAGAGCTAACCTTGGATATACATGGTTAGATGCCAAAAACTATCTCAAAGCAAGAAGACAACGCGATATGGTATATGGGGAAGCCGGTAGTCTTATGCAGTATTTTCAACGCCAATAG 576 0.3958 METITIPCVGMEFDDVEKAWKFWVEYGKRAGFGVRKLYLNKRKKDGFIRSCRFVCCKQGYRKTDKRSFLVKNPRAETKIGCEARIGLCEKNGKLVIHEFVEAHNHPLQLAETIHMLASHRKITTVQAYEIEMAEDSGLAQKASFQLMSAHAGNRANLGYTWLDAKNYLKARRQRDMVYGEAGSLMQYFQRQ. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02589 191 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 4 157 - -
Seca5g02589 191 Pfam FAR1 DNA-binding domain 21 108 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02589 Seca-Chr5 71578015 71578590 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g02589 FAR1 5.1e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02589 - - tpra:123886591 270.396