Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02579 ATGGATGTGAAAAACACAGAAAATTCTATTGCTAAGGGTACAGAAGATCATGAGAGAAATGATCATGTGTCTGATGAGGCTACTATTGATGAGCAACTTAATCTTTGTCCTAGCATTGGAATGAAATTTGATTCCCTTGAGGATGTTAAAGAGTTATACACATCATTTGCTAAGAAAGCGGGTTTTGGTATTTGTACTCGTTCAACTAAAAAGAATTTGTGTATACTTGTATGTTCTAATGAAGGCAAGCATATAGTCAGGAATGGTGAGGAAGAGGAATGTAATGTTTGCACGGGAAAAACAAAGAAAAAGTGCTCAACTTCAAGAACATATTGTAAGGCATCACTTATTATTTCAAAAGCATGGAAGAGAAGTAAATGGATTATCAAAAGCTTTGATAATGTTCATAATCATGCCATGATTATCCCTAAGAGTGTGGGCTATCTTTGA 450 0.3467 MDVKNTENSIAKGTEDHERNDHVSDEATIDEQLNLCPSIGMKFDSLEDVKELYTSFAKKAGFGICTRSTKKNLCILVCSNEGKHIVRNGEEEECNVCTGKTKKKCSTSRTYCKASLIISKAWKRSKWIIKSFDNVHNHAMIIPKSVGYL. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02579 149 Pfam FAR1 DNA-binding domain 52 140 IPR004330 -
Seca5g02579 149 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 13 144 - -
Seca5g02579 149 MobiDBLite consensus disorder prediction 9 24 - -
Seca5g02579 149 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02579 Seca-Chr5 71521345 71521794 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g02579 FAR1 9.2e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02579 - - tpra:123895864 157.532