Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02575 ATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTAATCCTTGCTCCAAAAACTACACTTTATACTTGGTACAAGGAATTCATCAAGTGGGAGATTCCTATTCCAGTGTATCTAATTCATTGTGATAAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCTCACCAGTGATGTCAAGCATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCTAGTGTTATGGTCATGGGGTATACTTCATTTTCATCACTAACGAGAGAGAATTTAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAGCACTGGGATCCTTATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTTTGGTACATTATTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATATAAAACAAAAGAAGGGAAATGATAAAAATCCAGAGAAAGCACAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTAACAAGCTTCCTGGTTTGAAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAGAAACTGCAAAATAAAATATATGGGTCCAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTGCGGATAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAACCTTATCTTTCATGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGCACAGTTGTTTGAGGAATGCTTCAAATGGAAAAAGGATGGAGAAATTTTGTTACTTTGTGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTGTTACTTGCTTCAATTACAACTTGTGCTGAAGGTATTGGTCTTACTGCAGCTTCTCAGTTGATATTTTTGGACTCGAAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAAATCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGTAGAACCACTTGGAAAGAATGGGTTTCCAGCATGATTTTCAGTGAGGATTTTGTGGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGAATGATGAGTCTAAAGCAATCCATATGATCATGAAGAATGAAAAAGCTTTAAAAAACTAA 1674 0.3835 MEVESERRGGCVISHTPGAGKTFLVIAFLVSYLKLFPDKKPLILAPKTTLYTWYKEFIKWEIPIPVYLIHCDKNLRDFDETPLTIPGVPNLTSDVKHVLDCLEKIKKWHLHPSVMVMGYTSFSSLTRENLKYEHKKYMAKALRESTGILILDEGHNPRSTRSRLRKGLMKVETELRILLFGTLFQNNFGEYFNTLCLARPKFVQEVLKELDIKQKKGNDKNPEKAQHLLETRARKFFLDDIANKIDSSDDEVRMQGLNMLRKITSGFIDVYESGNSNKLPGLKIYTLLMNLTDVQNELLQKLQNKIYGSSVFPLEGELMVTLGSIHPWLIKTATSADKFYTSQELNQLEKFKSDFRVGSKVRFILNLIFHVVKEEKVLIFCRNLAPMKLLAQLFEECFKWKKDGEILLLCGEQDLFERGKVIDKFEDPCGVSKVLLASITTCAEGIGLTAASQLIFLDSKWNPSKIKQAIARAFRPGQEKMVYVYQILAKGSMEEDKYRRTTWKEWVSSMIFSEDFVENPSQWQAEKIEDDILREMVENDESKAIHMIMKNEKALKN. 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02575 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 203 IPR027417 -
Seca5g02575 557 SMART ultradead3 2 213 IPR014001 -
Seca5g02575 557 Gene3D - 280 557 IPR027417 -
Seca5g02575 557 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 363 524 IPR001650 -
Seca5g02575 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 541 IPR027417 -
Seca5g02575 557 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 2 201 IPR014001 -
Seca5g02575 557 Pfam SNF2-related domain 8 303 IPR000330 GO:0005524|GO:0140658
Seca5g02575 557 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 4 554 IPR044567 GO:0080188
Seca5g02575 557 Gene3D - 1 243 IPR038718 -
Seca5g02575 557 SMART helicmild6 388 477 IPR001650 -
Seca5g02575 557 Pfam Helicase conserved C-terminal domain 360 476 IPR001650 -
Seca5g02575 557 CDD SF2_C_SNF 352 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02575 Seca-Chr5 71449098 71450805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02575 406 495 RAD5 or RAD16-like Gene Family AT5G05130 39.560 4.37e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g02575 SNF2_N 1.3e-14 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02575 K10875 - gmx:100811703 806.594