Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02574 ATGGGAGAAACCGGTATCATTCTTCGCTTCCCGGGAGGAACAACAACCTTAGACCCCACAGCACAAGAGTTCACACCCACCACCACCACCACCACCACCACTAACCACGCCATTCCCTTCCCCCTCCCCCTCCCCGTCGCCGTCGGTGTTCCCTACCCTCACTTCGCCGCCGCTGCTGACGTCACTTCTCCGGTCCAGCTGTCCACGTCACCCACCCGCTCTCTCCTCCTCAACCCCGTTCCCCTCACCAGCGAGTCCGCATTACGAAATGACCTCGAGGTTTTCGGCGACGTCAGAGCCGTCCAGATGGAAGCTCTCCATCACGGAATCGTCACCGTTCATTTCTACGATCTCAGGCATGCACAGAACGCCTTCACCGCCATTCGAAACCAACACATGCACTGCGCTTCCTTCTTCAACTCCCCTCCTCAATTCTACTCCGCTCCACCGCCGCCACCAGTTGGCCTCGTCGCCGGTCGTCCCGTCTGGGCCCACTACGTCATCCCTGCCTCCAATACTCTCCTTAACGGTCACAACCAAGGCACCGTCGTCGTTTTCAACTTGGACATTGACGTCTCCACTGAGAATCTTCGACAAATTTTTGAACCTTTTGGTCCCATAAAGGAAGTGAGAGATACGCCATGGAAAAAGAACCAAAGATTCGTGGAGTTCTTTGACATAAGAGACGCAGCCAAGGCTTTGAAACAGATGAATGGCAGAGAAATTCATGGAAAACCCGTTATTATTGAGTTCAGTAGACCAGGGGGTCACTCCAGAAAGTTCTTCCATTCCAAAAACCCTCCTCTTCTGTCACCACCAAATTTCTCTCCTCCGCGACGTCGTTTTGCTCAACCACATTTCTCTCACAAGAAATCGACGGTTAAGATTCCAAATCCTGCGTCTATTGCCGCGTCAATGGCTTCAATGAGTTTGGGCGGGGAAGGTGGGGTTGAAGAGCAGCATTCACATGGTCCTCCAAGAAGGAATGTTGTTAGAAAGCACAATAGCGAGACCACAGTGGAAAACACAAAGCAGCAACAACCACAACTACCTAGAAGTAGATATTGGAAGGGAAAGCATGTGAAGAAACACGAAACTCGGTTTCTAATCAAAGAAGATGCCATTGTTGAGTCCAGTTCAAAAGATTCTAGAACTACTGTGATGATCAAGAACATACCCAACAAATACAGCCAGAAGCTACTGTTGAACATGTTGGATAACCACTGCATACACTGTAACGAGCAGATTGGTGACAGCGACGACCAGACTATATCCTCCTACGACTTCGTGTACCTTCCCATTGATTTCAACAACAAGTGCAATGTGGGATACGGGTTTGTGAATATGACATCTCCTGAGGCCACTCTCAGACTCTACAAGGCCTTCCATCTTCAACACTGGGAGGTTTTCAATTCAAGAAAAATTTGCGAAGTCACCTACGCTAGAGTTCAGGGTTTGGAAGCGTTGAAAGAGCATTTTAAGAACTCAAAGTTCCCATGCGAGATGGAGCATTACATGCCAGTGGTGTTTTCACCGCCTCGAGATGGGAGGGAACTGACGGAGCCACTACCAATAGTGGGGAACAAGGAGCAGCAAATGGGCATTGAGGTACCCAGTTGTGGTGATGAGATGGAGAGTGGAGATAGGGTAGGTGATTCTGAGTATGATAACGTGTCTAGTAGCAAAAGCGGCGGCGTGGGTGATGATGACACAAGAAGTAATGAAGAAGTGGGTGAAGGCCTGCTCCAGCTGAGCACTTCTGATGATGATACGAAAGTTTGA 1782 0.4966 MGETGIILRFPGGTTTLDPTAQEFTPTTTTTTTTNHAIPFPLPLPVAVGVPYPHFAAAADVTSPVQLSTSPTRSLLLNPVPLTSESALRNDLEVFGDVRAVQMEALHHGIVTVHFYDLRHAQNAFTAIRNQHMHCASFFNSPPQFYSAPPPPPVGLVAGRPVWAHYVIPASNTLLNGHNQGTVVVFNLDIDVSTENLRQIFEPFGPIKEVRDTPWKKNQRFVEFFDIRDAAKALKQMNGREIHGKPVIIEFSRPGGHSRKFFHSKNPPLLSPPNFSPPRRRFAQPHFSHKKSTVKIPNPASIAASMASMSLGGEGGVEEQHSHGPPRRNVVRKHNSETTVENTKQQQPQLPRSRYWKGKHVKKHETRFLIKEDAIVESSSKDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGDSDDQTISSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYMPVVFSPPRDGRELTEPLPIVGNKEQQMGIEVPSCGDEMESGDRVGDSEYDNVSSSKSGGVGDDDTRSNEEVGEGLLQLSTSDDDTKV. 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02574 593 MobiDBLite consensus disorder prediction 578 593 - -
Seca5g02574 593 PANTHER RNA RECOGNITION MOTIF-CONTAINING 353 511 - -
Seca5g02574 593 SMART rrm1_1 182 250 IPR000504 GO:0003723
Seca5g02574 593 FunFam Protein MEI2-like 1 180 269 - -
Seca5g02574 593 MobiDBLite consensus disorder prediction 320 339 - -
Seca5g02574 593 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 246 IPR000504 GO:0003723
Seca5g02574 593 Gene3D - 176 261 IPR012677 -
Seca5g02574 593 SUPERFAMILY RNA-binding domain, RBD 66 133 IPR035979 GO:0003676
Seca5g02574 593 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 254 IPR000504 GO:0003723
Seca5g02574 593 Gene3D - 327 489 IPR012677 -
Seca5g02574 593 SUPERFAMILY RNA-binding domain, RBD 182 462 IPR035979 GO:0003676
Seca5g02574 593 MobiDBLite consensus disorder prediction 312 352 - -
Seca5g02574 593 Pfam RNA recognition motif 2 384 494 IPR007201 -
Seca5g02574 593 MobiDBLite consensus disorder prediction 553 567 - -
Seca5g02574 593 CDD RRM3_EAR1_like 384 485 IPR034458 -
Seca5g02574 593 MobiDBLite consensus disorder prediction 531 593 - -
Seca5g02574 593 FunFam Terminal EAR1-like 1 331 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02574 Seca-Chr5 71292086 71294513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02574 183 253 Eukaryotic Initiation Factors Gene Family AT2G23350 36.000 1.36e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02574 - - vum:124847631 701.049