Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02567 ATGGAAATTGAAAGTCTGCCAAATTGGTTTGGTGAAGAGATGTACAGCACAGAATGTACTAGTGAAGAGAACATTGTCCTTGATGTGATGAAGCACTGGGATGAATTTGAAGAAGAAATGACTAACATAGATGAACTTGTAGAAGAAATGACTAAGATAGAAGCTGCGATGAAGCACTACGATGAATTTGTAGAAGAAATGACTGAGATAGAAGCTGCAGTAGTTCCTGGATATCCCCCCTCTTCTTTATACACGGAGATGGTTGACAACCTACATGGTCATGATGGATGCAAAAAGAGTCCTGCGACTGCCAAGGGTTCTGATCAGGAGAGGAAGAAAGTGGTTCGTTGGACAAAAGAGGAGCATGGACGCTTTCTGGTGGGACTTGAGAACTATGGCAGAGGACATTGGAAAAATATAGCTCGCTATTCTGTAAGAACAAAAACTCCTACCCAAGTGGCAAGCCATGCTCAAAAGTACTTCCTAAGGCAAAAGCTTTCGGGAGGGAAAGATAATAAAAGGAGGTCTAGTATCCATGATATCACCACTGACAATCTTACAGAACCTACAACTAATTCAGGTCAAGACAAGCCTCTTTTGTTCAATGAGTCTCTCATGCCAATTATGCAAGCAGAAGGGATTAATCACCTCATTGAGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGAATCTCTCATGACAAATGTGCAACCAGAAGGGATTAATCACCTCAATGAGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGAGTCTCTCATGACAAATGTGCAACCAGAAAGGATTAATCACCTCAATGAGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGAGTCTCTCATGACAAATGTGCAACCAGAAGGGATTAATCACCACAATGTGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGATGAAATGTTCATGTTTCCCTCATCTGATATCTATTCCGAGACCCTCAAGTTTCAAGGTCAGCAGGATCTAGACAAATGTCTTTTTCATCATGCTTATGCCCAGCAAAATGCTCAAGGTTTCGGAACCACTTCTAATGACTTCAATAAGGACGCTGTTTTTGGGTTTTGA 1113 0.4124 MEIESLPNWFGEEMYSTECTSEENIVLDVMKHWDEFEEEMTNIDELVEEMTKIEAAMKHYDEFVEEMTEIEAAVVPGYPPSSLYTEMVDNLHGHDGCKKSPATAKGSDQERKKVVRWTKEEHGRFLVGLENYGRGHWKNIARYSVRTKTPTQVASHAQKYFLRQKLSGGKDNKRRSSIHDITTDNLTEPTTNSGQDKPLLFNESLMPIMQAEGINHLIEEPLMEVFNPNYESLMTNVQPEGINHLNEEPLMEVFNPNYESLMTNVQPERINHLNEEPLMEVFNPNYESLMTNVQPEGINHHNVEPLMEVFNPNYDEMFMFPSSDIYSETLKFQGQQDLDKCLFHHAYAQQNAQGFGTTSNDFNKDAVFGF. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02567 370 MobiDBLite consensus disorder prediction 166 197 - -
Seca5g02567 370 ProSiteProfiles Myb-like domain profile. 109 161 IPR001005 -
Seca5g02567 370 SUPERFAMILY Homeodomain-like 111 165 IPR009057 -
Seca5g02567 370 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 37 259 IPR043363 -
Seca5g02567 370 Pfam Myb-like DNA-binding domain 116 161 IPR001005 -
Seca5g02567 370 Coils Coil 36 56 - -
Seca5g02567 370 ProSiteProfiles SANT domain profile. 116 165 IPR017884 -
Seca5g02567 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 165 IPR017930 -
Seca5g02567 370 MobiDBLite consensus disorder prediction 166 181 - -
Seca5g02567 370 MobiDBLite consensus disorder prediction 182 197 - -
Seca5g02567 370 Gene3D - 115 166 - -
Seca5g02567 370 CDD SANT 116 161 IPR001005 -
Seca5g02567 370 SMART sant 113 163 IPR001005 -
Seca5g02567 370 NCBIfam myb-like DNA-binding domain, SHAQKYF class 112 164 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02567 Seca-Chr5 71081801 71084269 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca5g02567 Myb_DNA-binding 7.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02567 - - gmx:100788982 208.764