Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02566 ATGGAACAATTATTCTTACTAGTTAAGCAAACATGTGATCATCCTTTTAATGAGAGGTTGAAGGAAAGTTATAAGATTACAACTGGTTTATTCCTTCTTCAAAATAGAGCTGTGGAACAACATCAAAGGGGGGCAGCTAATGGCATTGCAATGACTGAAAGTGGTGGCCATGTGTTTTGTGCTGAAATATGTATCATTTGGGGAGGACTGTCTCTGATGAGTGCACTCCCAAATCTTGGTTTCATATTAGAGGCATCAATATCTGCTACCAGGATTTTTGAGATGATTGACAGAAAGCCAACTATAAACTCCAATAAAGAAAAAGGAAGGATCTTAAAACATGCAAGAGGAGAGATTACATTTAAGGAGGTTGACTTTAGTTACCCTTCAAGGCCAGATACACTTATTCTCCAAGGACTCAATCTAAAAGTGCAGGCAGGACTGGTAAACCAAGAGCCAATTCTCTTTGCAACATCCATAAAGGAGAACATTCTATTTGGCAAGGAAGGAGCTTCAATAGAAGATGTTATAAGTGCAGCAAAGGCAGCAAATGCACATGATTTCATTATTAAACTTCCTAATGGATATGAAACTCAAGTAGGACAACTTGGAGCTCAGTTATCTGGAGGGCAAAAGCAAAGGATTGCCATTGCAAGGGCTTTAATAAGAGACCCTAAAATCCTACTACTTGATGAAGCTACTAGTGCTTTGGATTCACAATCTGAAAGACTAGTCCAAAATGCCCTTGACTTAGCTTCTAGAGGTAGGACTACAATCATCATAGCCCATCGCCTTTCTACAATTCGTAAGGCAGATTCAATAGTAGTTCTTCAATCAGGAAGAGTGGTTGAATGTGGTTCCCATGATGAACTACTTCAACTGAACAATGGACAAGGAGGGGCTTACAGCAAAATGCTACAACTACAACAAGCAACAACTCAAAATGAAAATGCACTTCATCAAATAAACAAAAGCCCCCATGTAATGGAAAATCTAAGAAGTTCAAGCTTTGATGACTACAACATTGAAAACTCAGAGAAATCTTCCCATTCAAACTTCTCCCAATGGCGTTTACTACAAATGAATGCCCCTGAGTGGAAGCATGCTTTGCTTGGATGTTTAGGTGCCATTGGCTCAGGAATATGTCAACCAATTTATTCTTATTGTTTGGGAATAGTTGCATCTGTCTACTTTATAAAAGATAGCTCTCAAATCAAATCACAAATCAGGTTGTACTCCTCCATCTTCTGCTGCATAGCTGTTGTAAATTTCATCTCAGGCCTCCTTCAACACTACAATTTTGCCATCATGGGAGAGAGGTTGCTAAAAAGGGTGAGAGAATTTTTGCTAGAAAAGGTGCTAACTTTTGAGGTAGGATGGTTTGACCAAGAGGAGAACACAAGTGCAGCAATTTGTGCACGTTTGGCAACTGAAGCCAACTTGGTTAGATCCCTTGTTGCAGAAAGAATTTCTTTGTTAGTTCAAATTTCTGTCACAGCTACACTAGCTTTTGTACTTGGTTTAATTGTTTCATGGAGGGTGGCTATTGTTATGATTGCTATGCAGCCTTTGATCATTGCATGTTTATACTCAAAAAGCATTCTCATGAAAAGTATGTCAGGCAAAGCAAGAAGTGCTCAAAGAGAGGGTAGTCAATTAGCAATGGAAGCTACTATTAACCATAGGACTATAGCTGCATTCTCATCTGAGAAAAGGATGCTAAATTTGTTCAAAACTGCTATGGAGGGCCCCAAGAAGGAAAGCATCAAGCAATCATGGATTTCAGGTTCCATATTGTCAATGTCACAGTTTATAACAACAGCATCTATAACTTTGACATTTTGGTATGGTGGCAGGTTATTGAATCAAGGGTTAGTGGAATCAAAACATCTTTTGCAAGTTTTCCTCATTTTGATGGGCACTGGTAAGCAAATTGCAGATACAGGAAGCATGACATCTGACAGCTAA 1968 0.3892 MEQLFLLVKQTCDHPFNERLKESYKITTGLFLLQNRAVEQHQRGAANGIAMTESGGHVFCAEICIIWGGLSLMSALPNLGFILEASISATRIFEMIDRKPTINSNKEKGRILKHARGEITFKEVDFSYPSRPDTLILQGLNLKVQAGLVNQEPILFATSIKENILFGKEGASIEDVISAAKAANAHDFIIKLPNGYETQVGQLGAQLSGGQKQRIAIARALIRDPKILLLDEATSALDSQSERLVQNALDLASRGRTTIIIAHRLSTIRKADSIVVLQSGRVVECGSHDELLQLNNGQGGAYSKMLQLQQATTQNENALHQINKSPHVMENLRSSSFDDYNIENSEKSSHSNFSQWRLLQMNAPEWKHALLGCLGAIGSGICQPIYSYCLGIVASVYFIKDSSQIKSQIRLYSSIFCCIAVVNFISGLLQHYNFAIMGERLLKRVREFLLEKVLTFEVGWFDQEENTSAAICARLATEANLVRSLVAERISLLVQISVTATLAFVLGLIVSWRVAIVMIAMQPLIIACLYSKSILMKSMSGKARSAQREGSQLAMEATINHRTIAAFSSEKRMLNLFKTAMEGPKKESIKQSWISGSILSMSQFITTASITLTFWYGGRLLNQGLVESKHLLQVFLILMGTGKQIADTGSMTSDS. 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02566 655 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 370 655 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g02566 655 Gene3D - 145 324 IPR027417 -
Seca5g02566 655 FunFam ABC transporter B family member 28 144 311 - -
Seca5g02566 655 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 58 304 IPR003439 GO:0005524
Seca5g02566 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 309 IPR027417 -
Seca5g02566 655 Pfam ABC transporter 113 235 IPR003439 GO:0005524
Seca5g02566 655 Pfam ABC transporter transmembrane region 371 637 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g02566 655 CDD ABC_6TM_Pgp_ABCB1_D2_like 359 654 - -
Seca5g02566 655 Gene3D ABC transporter type 1, transmembrane domain 27 136 IPR036640 GO:0005524|GO:0016020
Seca5g02566 655 PANTHER ABC TRANSPORTER B FAMILY 54 147 IPR039421 -
Seca5g02566 655 SUPERFAMILY ABC transporter transmembrane region 357 649 IPR036640 GO:0005524|GO:0016020
Seca5g02566 655 ProSitePatterns ABC transporters family signature. 207 221 IPR017871 GO:0005524|GO:0016887
Seca5g02566 655 Gene3D ABC transporter type 1, transmembrane domain 337 655 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02566 Seca-Chr5 71076949 71079970 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02566 54 654 Calmodulin-binding Proteins AT2G36910 40.029 4.85e-145 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02566 K05658 - gmx:100804664 968.763