Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02562 ATGATTGACAGAAAGCCAACTATAAACTCCAATAAAGAAAAAGGAAGGATCTTAAAACATGCAAGAGGAGAGATTACATTTAAGGAGGTTGACTTTAGTTACCCTTCAAGGCCAGATACACTTATTCTCCAAGGACTCAATCTAAAAGTGCAGGCAGGACTGGTAAACCAAGAGCCAATTCTCTTTGCAACATCCATAAAGGAGAACATTCTATTTGGCAAGGAAGAAGCCTCATTGGAAGCTGTTACAAGTGCAGCAAAGGCAGCAAATGCACATGATTTCATTATTAAACTTCCTAATGGATATGAAACTCAAGCAGATTCAATAGTAGTTCTTCAATCAGGAAGAAGAGTGGTTGAATGTGGTTCCCATGATGAACTACTTCAACTGAACAATGGACAAGGAGGGGCTTACAGCAAAATGCTACAACTACAACAAGCAACAACTCAAAATGAAAATGCACTTCATCAAATAAACAAAAGCCCCATCTTTGATGACTACAACATTGAAAAATCAGAGAAATCTTCCCATTCAAACTTCTCCCAATGGCGTTTACTACAAATGAATGCCCCTGAGTGGAAGCATGCTTTGCTTGGATGTTTAGGTGCCATTGGCTCAGGAATATGCCAGCCAATTTATTCCTATTGCTTGGGAATAGTTGCATCTGTTTACTTTATAAAAGATAGCTCTCAAATCAAATCACAAATCAGGTTGTACTCCTCCATCTTCTGCTGCATAGCTGTTGTAAATTTCATCTCAGGCCTCCTTCAACACTACAATTTTGCCATCATGGGAGAGAGGTTGCTAAAAAGGGTGAGAGAATTTTTGCTAGAAAAGGTGCTAACTTTTGAGGTAGGATGGTTTGACCAAGAGGAGAACACAAGTGCAGCAATTTGTGCACGTTTGGCAACTGAAGCCAACTTGGTTAGATCTCTTGTTGCAGAAAGAATTTCATTGTTAGTTCAGATTTCTGTCACAGCTACACTAGCTTTTGTACTTGGTTTAATTGTTTCATGGAGGGTGGCTATTGTTATGATTGCTATGCAGCCTTTGATCATTGCATGTTTATACTCAAAAAGCATTCTCATGAAAAGTATGTCAGGCAAAGCAAGAAGTGCTCAAAGAGAGGTTAGTCAATTAGCAATGGAAGCTACTATTAACCATAGGACTATAGCTGCATTCTCATCTGAGAAAAGGATGCTAAATTTGTTCAGAACTGCTATGGAGGGCCCCAAGAAGGAAAGCATCAAGCAATCATGGATTTCAGGTTCCATATTGTCAGTGTCACAATTTATAACAACAGCATCTATAACTTTGACTTTTTGGTATGGTGGCAGGCCAGATCAAATGATTCTCAAGGGCCTTAGTCTTGATATTGAAGCTGGTAAAACAGTGGCATTAGTGGGACAGAGTGGCTCAGGAAAATCCACTATCATTGGCTTAATTGAAAGATTCTATGACCCCATGAAGGGATCCATATCCATAGACAATTGTGATATCAAGGAATTCAATTTGAGAAGTTTGAGATCACATATTGCCCTTGTGAGTCAGGAGCCAACCCTCTTTGCAGGAACTATACGTGACAACATTGTCTATGGGAAAGAGGATGCATCAGAAGATGAAATAAGAAGGGCAGCACGTCATGCAAATGCTCATGAGTTTATAAGGTACACTTTCTACTAA 1683 0.3933 MIDRKPTINSNKEKGRILKHARGEITFKEVDFSYPSRPDTLILQGLNLKVQAGLVNQEPILFATSIKENILFGKEEASLEAVTSAAKAANAHDFIIKLPNGYETQADSIVVLQSGRRVVECGSHDELLQLNNGQGGAYSKMLQLQQATTQNENALHQINKSPIFDDYNIEKSEKSSHSNFSQWRLLQMNAPEWKHALLGCLGAIGSGICQPIYSYCLGIVASVYFIKDSSQIKSQIRLYSSIFCCIAVVNFISGLLQHYNFAIMGERLLKRVREFLLEKVLTFEVGWFDQEENTSAAICARLATEANLVRSLVAERISLLVQISVTATLAFVLGLIVSWRVAIVMIAMQPLIIACLYSKSILMKSMSGKARSAQREVSQLAMEATINHRTIAAFSSEKRMLNLFRTAMEGPKKESIKQSWISGSILSVSQFITTASITLTFWYGGRPDQMILKGLSLDIEAGKTVALVGQSGSGKSTIIGLIERFYDPMKGSISIDNCDIKEFNLRSLRSHIALVSQEPTLFAGTIRDNIVYGKEDASEDEIRRAARHANAHEFIRYTFY. 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02562 560 SUPERFAMILY ABC transporter transmembrane region 184 446 IPR036640 GO:0005524|GO:0016020
Seca5g02562 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 145 IPR027417 -
Seca5g02562 560 Pfam ABC transporter 452 553 IPR003439 GO:0005524
Seca5g02562 560 Pfam ABC transporter transmembrane region 198 445 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g02562 560 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 51 105 IPR039421 -
Seca5g02562 560 Gene3D ABC transporter type 1, transmembrane domain 159 442 IPR036640 GO:0005524|GO:0016020
Seca5g02562 560 Gene3D - 106 158 IPR027417 -
Seca5g02562 560 Gene3D - 53 105 IPR027417 -
Seca5g02562 560 Gene3D - 15 52 IPR027417 -
Seca5g02562 560 Gene3D - 443 556 IPR027417 -
Seca5g02562 560 CDD ABC_6TM_Pgp_ABCB1_D2_like 186 446 - -
Seca5g02562 560 Gene3D ABC transporter type 1, transmembrane domain 1 14 IPR036640 GO:0005524|GO:0016020
Seca5g02562 560 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 197 446 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca5g02562 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 439 556 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02562 Seca-Chr5 71049508 71054492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02562 439 555 Calmodulin-binding Proteins AT2G36910 56.410 3.02e-34 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02562 K05658 - gmx:100804664 557.37