Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02548 ATGGAAATTGAAAGTCTGCCAAATTGGTTTGATGAAGAGATGTACCGCACAGAATGTACTAGTGAAGAGAACATTGTCCTTGATGTGATGAAGCACTGGGATGAATTTGAAGAAGAAATGACTAAGATAGATGAATTTGTAGAAGAAATGACTAAGATAGAAGCTGCGATGAAGCACGACGATGAATTTGTAGAAGAAATGACTAAGATAGAAGCTGCAGTAGTTCCTGGATATCCCACCTCTTCTTTATGCACCGAGATGGTTGACAACATGCAGGGTCATGATGGATGCAAAAAGAGTCCCGCCACTGCCAAGGGTTCTAATCAGGAGAGGAATAAAGCCGTTCGTTGGACAAAAGAGGAGCATGGACGCTTTCTGGTGGGACTTGAGAACTATGGCAGAGGACATTGGAAAAATATAGCTCGCTATTCTGTAAGAACAAAAACTCCTACCCAAGTGGCAAGCCATGCTCAAAAGTACTTCCTAAGGCAAAAGCTTTCGGGAAGGAAAGATAATAAAAGGAGGTCTAGTATCCATGATATCACCACTGACAATCTTACAGAACCTACAACTAATTCAGGTCAAAACAAGCCTCTTTTGTTCAATGAGTCTCTCATGCCAATTATGCAAGCAGAAGGGATTAATCACCTCATTGAGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGAGTCTCTCATGACAAATGTGCAACCAGAAGGGATTAATCACCTCAATGAGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGAGTCTCTCATGACAAATGTGCAACCAAAAGGGATTAATCACCACAATGTGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGATGAAATGTTCATGTTTCCCTCATCTGATATCTATTCCGAGACCCTCAAGTTTCAAGGTCAGCAGGATCTAGACAAATGTCTTTTTCATCATGCTTATGCCCGGCAAAATGCTCAAGGTTTCGGAACCACTTCTAATGACTTCGATAAGGACGTTGTTTTTGGGCTTTGGTGA 1032 0.4138 MEIESLPNWFDEEMYRTECTSEENIVLDVMKHWDEFEEEMTKIDEFVEEMTKIEAAMKHDDEFVEEMTKIEAAVVPGYPTSSLCTEMVDNMQGHDGCKKSPATAKGSNQERNKAVRWTKEEHGRFLVGLENYGRGHWKNIARYSVRTKTPTQVASHAQKYFLRQKLSGRKDNKRRSSIHDITTDNLTEPTTNSGQNKPLLFNESLMPIMQAEGINHLIEEPLMEVFNPNYESLMTNVQPEGINHLNEEPLMEVFNPNYESLMTNVQPKGINHHNVEPLMEVFNPNYDEMFMFPSSDIYSETLKFQGQQDLDKCLFHHAYARQNAQGFGTTSNDFDKDVVFGLW. 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02548 343 NCBIfam myb-like DNA-binding domain, SHAQKYF class 112 164 IPR006447 GO:0003677
Seca5g02548 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 165 IPR017930 -
Seca5g02548 343 SMART sant 113 163 IPR001005 -
Seca5g02548 343 ProSiteProfiles Myb-like domain profile. 109 161 IPR001005 -
Seca5g02548 343 Gene3D - 115 166 - -
Seca5g02548 343 MobiDBLite consensus disorder prediction 165 181 - -
Seca5g02548 343 SUPERFAMILY Homeodomain-like 111 165 IPR009057 -
Seca5g02548 343 ProSiteProfiles SANT domain profile. 116 165 IPR017884 -
Seca5g02548 343 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 37 238 IPR043363 -
Seca5g02548 343 MobiDBLite consensus disorder prediction 182 197 - -
Seca5g02548 343 CDD SANT 116 161 IPR001005 -
Seca5g02548 343 MobiDBLite consensus disorder prediction 165 197 - -
Seca5g02548 343 Pfam Myb-like DNA-binding domain 116 161 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02548 Seca-Chr5 70905406 70906632 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca5g02548 Myb_DNA-binding 5.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02548 - - gmx:100783469 229.95