Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02546 ATGATTGACAGAAAGCCAACTATAAACTCTAATAAAGAAAAAGGAAGGATCTTAAAACATGCAAGAGGAGAGATTACATTTAAGGAGGTTGACTTTAGTTACCCTTCAAGGCCAGATACATTGATTCTCCAAGGACTGAATCTAAAAGTGCAGGCAGGTAAAACAGTAGGCCTAGTTGGAGGGAGTGGTTCTGGAAAATCTACAATCATCTCTTTGCTTGAAAGATTTTATGATCCTGTATGTGAGGAGAACATTCTATTTGGCAAGGAAGGAGCTTCAATGGAAGCTGTTACAAGTGCAGCAAAGGCAGCAAATGCACATGATTTCATTATTAAACTTCCTAATGGATATGAAACTCAACGTGGAGAAAGAGGAGTGCAATTGTCAGGAGGGCAGAAGCAGAGGATAGCAATTGCTAGAGCAATGCTTAAGAACCCATCAATCCTTCTCTTAGATGAGGCAACAAGTGCTCTAGACAGTGTGTCAGAGAATCTAGTGCACAAGGCGCTGGAGAAAATGATGGTTGGAAGAACATGTGTAGTTATAGCTCACCGTTTGTCAACAATACAATAG 573 0.4031 MIDRKPTINSNKEKGRILKHARGEITFKEVDFSYPSRPDTLILQGLNLKVQAGKTVGLVGGSGSGKSTIISLLERFYDPVCEENILFGKEGASMEAVTSAAKAANAHDFIIKLPNGYETQRGERGVQLSGGQKQRIAIARAMLKNPSILLLDEATSALDSVSENLVHKALEKMMVGRTCVVIAHRLSTIQ. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02546 190 PANTHER ABC TRANSPORTER B FAMILY 82 190 IPR039421 -
Seca5g02546 190 Pfam ABC transporter 43 89 IPR003439 GO:0005524
Seca5g02546 190 ProSitePatterns ABC transporters family signature. 128 142 IPR017871 GO:0005524|GO:0016887
Seca5g02546 190 Gene3D ABC transporter type 1, transmembrane domain 1 14 IPR036640 GO:0005524|GO:0016020
Seca5g02546 190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 190 IPR027417 -
Seca5g02546 190 SMART AAA_5 52 188 IPR003593 GO:0016887
Seca5g02546 190 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 25 189 IPR003439 GO:0005524
Seca5g02546 190 Pfam ABC transporter 101 156 IPR003439 GO:0005524
Seca5g02546 190 Gene3D - 15 80 IPR027417 -
Seca5g02546 190 Gene3D - 82 190 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02546 Seca-Chr5 70899305 70901914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02546 1 190 Calmodulin-binding Proteins AT2G36910 54.867 3.64e-73 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02546 K05658 - fve:101309993 225.713