Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02541 ATGCAAGATGATATTCTTATAAAGAAGCTCCTCCTCACACATGATCCAGATGGTCGTAGGCTGGATTCTGAGACAATGCTTCATGCTGTTGGCAACATTATGTTTCATGCTTCCACAATAATAGTGGCTTCTAATATATATTCTGCTTCCTTTCAGAAGAATGATGTGACCGAAATTGAAACACTTGGTTGTTGTGAACCACTAGGGTGCATCATCTCAAAAATATGCAAGATTCTCTGCAAATGCTGTGGTGAAGGTGATATTAACTCAAGGATAATGAGTTCGTTTGATTTGATAGGAAAGTATAGCTGGGATGCAGCTTTTGCTGCAAGATATGGTGAATTCTGTCAACTTGTGCAGCTATATCCTGCTAATACTTTGGCGGCTTTAATTTGGAGACTTAAGAAAATGCCCTGCAACTTAAGGTCGCTGAAGCCCCAAATTAAGGCATTGAGTTTGTTGGTTAAGACCATGATGGATGTGGCTATGTGTATGGAAATTGAAAGTCTGCCAAATTGGTTTGATGAAGAGATGTACCGCACAGAATGTACTAGTGAAGAGAACATTGTCCTTGATGTGATGAAGCACTGGGATGAATTTGAAGAAGAAATGACTAAGATAGATGAATTTGTAGAAGAAATGACTAAGATAGAAGCTGCGATGAAGCACGACGATGAATTTGTAGAAGAAATGACTAAGATAGAAGCTGCAGTAGTTCCTGGATATCCCACCTCTTCTTTATGCACCGAGATGGTTGACAACATGCAGGGTCATGATGGATGCAAAAAGAGTCCCGCCACTGCCAAGGGTTCTAATCAGGAGAGGAATAAAGCCGTTCGTTGGACAAAAGAGGAGCATGGACGCTTTCTGGTGGGACTTGAGAACTATGGCAGAGGACATTGGAAAAATATAGCTCGCTATTCTGTAAGAACAAAAACTCCTACCCAAGTGGCAAGCCATGCTCAAAAGTACTTCCTAAGGCAAAAGCTTTCGGGAAGGAAAGATAATAAAAGGAGGTCTAGTATCCATGATATCACCACTGACAATCTTACAGAACCTACAACTAATTCAGGTCAAAACAAGCCTCTTTTGTTCAATGAGTCTCTCATGCCAATTATGCAAGCAGAAGGGATTAATCACCTCATTGAGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGAGTCTCTCATGACAAATGTGCAACCAGAAGGGATTAATCACCTCAATGAGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGAGTCTCTCATGACAAATGTGCAACCAAAAGGGATTAATCACCACAATGTGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGATGAAATGTTCATGTTTCCCTCATCTGATATCTATTCCGAGACCCTCAAGTTTCAAGGTCAGCAGGATCTAGACAAATGTCTTTTTCATCATGCTTATGCCCGGCAAAATGCTCAAGGTTTCGGAACCACTTCTAATGACTTCGATAAGGACGTTGTTTTTGGGCTTTGGTGA 1524 0.4088 MQDDILIKKLLLTHDPDGRRLDSETMLHAVGNIMFHASTIIVASNIYSASFQKNDVTEIETLGCCEPLGCIISKICKILCKCCGEGDINSRIMSSFDLIGKYSWDAAFAARYGEFCQLVQLYPANTLAALIWRLKKMPCNLRSLKPQIKALSLLVKTMMDVAMCMEIESLPNWFDEEMYRTECTSEENIVLDVMKHWDEFEEEMTKIDEFVEEMTKIEAAMKHDDEFVEEMTKIEAAVVPGYPTSSLCTEMVDNMQGHDGCKKSPATAKGSNQERNKAVRWTKEEHGRFLVGLENYGRGHWKNIARYSVRTKTPTQVASHAQKYFLRQKLSGRKDNKRRSSIHDITTDNLTEPTTNSGQNKPLLFNESLMPIMQAEGINHLIEEPLMEVFNPNYESLMTNVQPEGINHLNEEPLMEVFNPNYESLMTNVQPKGINHHNVEPLMEVFNPNYDEMFMFPSSDIYSETLKFQGQQDLDKCLFHHAYARQNAQGFGTTSNDFDKDVVFGLW. 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02541 507 MobiDBLite consensus disorder prediction 329 361 - -
Seca5g02541 507 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 280 329 IPR017930 -
Seca5g02541 507 SUPERFAMILY Homeodomain-like 275 329 IPR009057 -
Seca5g02541 507 MobiDBLite consensus disorder prediction 346 361 - -
Seca5g02541 507 ProSiteProfiles Myb-like domain profile. 273 325 IPR001005 -
Seca5g02541 507 Gene3D - 279 330 - -
Seca5g02541 507 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 190 400 IPR043363 -
Seca5g02541 507 CDD SANT 280 325 IPR001005 -
Seca5g02541 507 Pfam Sieve element occlusion N-terminus 2 175 IPR027942 -
Seca5g02541 507 SMART sant 277 327 IPR001005 -
Seca5g02541 507 MobiDBLite consensus disorder prediction 329 345 - -
Seca5g02541 507 Pfam Myb-like DNA-binding domain 280 325 IPR001005 -
Seca5g02541 507 ProSiteProfiles SANT domain profile. 280 329 IPR017884 -
Seca5g02541 507 NCBIfam myb-like DNA-binding domain, SHAQKYF class 276 328 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02541 Seca-Chr5 70846906 70849089 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca5g02541 SEO_N 2.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02541 - - gmx:100819823 242.276