Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02528 ATGTTAGGGGAAGAGGAGAAGGAGAAGGAGAAGGAGAAGAAACCCTCCGTTGAGGGTGTTACTAGGAGAATCTATTCTCGTTCTGTTTCATGGACTGATCGGTCTCCGAATACCCGAAAGCCACCGCCACCGCCACTACCGGGAAATAGCAAACCACCACGATCATTGTTGCCACCTCTTCAGCCTCTCTCAATCAGCAAGCGTAGCGTAGAGGAATGGCCTAGCGCAGGATCTGATGATCTTGGAGTTTGGCCCCTTCCACAAACTCCAAGAGGGTCCATCAGAGCCTATGAACCCAACAAGGATTTTCAGTTCAAGAGGGACAAATTGGCCTTCTTTGATAAGGAGTGTTCAAGAATTGCTGAGCATATATACTTGGGGAGTGATACAGTGGCCAAGAATCACCAACTCCTCAGTCGAAATGGAATAACACATGTGCTTAACTGTGTTGGGTTTGTTTGTCCAGAGTATTTCAAGAGTGATTTTGTGTATAAGACACTTTGGTTGCAGGATAGCCCCACAGAGGACATCACTAGTATTCTCTATGATGTGTTTGATTACTTTGAGGATGTTAGAGAGCAAGGTGGGCGTGTCCTTGTTCATTGTTGTCAAGGGGTTTCTCGATCAACAACTCTGGTAATTGCTTACCTCATGTGGAGGGAGGGACAAAGCTTTGAAGATGCTTTTCAGTTTGTGAAGACTGCAAGGGCAGTGACTAACCCCAACATGGGTTTTGCTTGTCAACTTTTGCAGTGTCAGAAACGAGTACATGCTATGCCTGCAAGTCCAAATTCTATTCTTAGGATGTACAGGATGGCTCCTCACTCTCCCTATGACCCTCTTCATTTGGTCCCTAAAATGGTAAACCAGCCAGGTGTACAAGCACTTGATTCTCGTGGGGCATTCATTATCCATATTCCTTCTGCTATTTATGTTTGGATTGGAAAACATTGTAACTCTGTGATGTCATGCAATGCAAGGAGTGCAGCCTTTCAGGTCATCCGTTATGAGAGGGCAAAGGGACCAATTCTGAGCATCCATGAAGATGAAGAACCACCCGGATTTTGGGGTGCTCTTGCTGATACTTCTGACAAAGCAGGGGTCAAGGAGGAACCACCAGTGTTGAATTCTGAAAGCATGGAGATTGCTGATGCGGTTAATATGGGGATTGGTCCAAGAAAAGTTGATGCATATGATTTGGATTTTGAGATTTTCCACAAGGCACTTGCTGGTGGGGTTGTTCCACCTTTTTCTGTATATAATGCTGAATCAGAAACTTGCCTTCCTGCTAGAGAACATGGTTGGGCAAGACTGAGGAGGAAGTTTGCTAGTGGTGTCATGAAAGAATTGTTAGCATCCCCCAAATGGAACTGTGATGCAACCTCTTCCAATGATAAATGCAGTGTAATTGTGGAAGAAGAAAACATAGATTCTGTGGCTGATCCTTTGTCACCATCATCAAATCATCCCTGTGGTTCACCAGATTCCTTTGAATGTTCTCCAAATGACAGCTTAGGCAGGGCAAAAGATACTGTTGAAGCCATGGACTTCTCTGGTCCTGGTGTTGCTTCATTACTGCCACTGTCTCCTCCTGGCACATCAAATTCTTTTCCTTGTTTTCTAAGCAGCAGCCCAAAATTCAATTCCAAGTCGCCAACACTTTCACCTTCAAGTTCTGATTATGCAAGTTCATTTACATTTTCACCTTCCTCTACCAATTGGTCAGACTTGTCATTTGTGTCTTCTAGGCAGCCATCACCATCTGGCCTGGAATCAACTGAACCCTTTTATGATAAAGATGTATCTTTCTCAGGAAGTTCCTCTTTACTTCACAAAGAAGATGTCTCTTCACCTTCAGAGTCATTTTTGGCTAATCACACCATGGGAGGAGCAAATTCCAATTTGCCACGGAAAGGGTCTTTTCTCTCCATTGCAGAGCGCAGAGGGAATCCACCACCTCGGATGTTGCTATCCTCTATTAACGAATCCTCTCACGTCCACAAGAACCTGGTAAGATCACAATCATTCTCTTTGCCTGACTTAGATGATAATATGATGAAGGATGATGGTTGCAAACAATCTGATCATGAAAACAATGGAAAATGGCTAGTATCAGATGATGGTATCATTAGTTCAGGTGTTGAATCGCAGGGTGAGATTAATGACATAGAGGAACACGGTACCACGGTATGTAATATGATGGCTGAGCTTGAAGTAGAGGAGAAAGTTAATTAA 2235 0.4394 MLGEEEKEKEKEKKPSVEGVTRRIYSRSVSWTDRSPNTRKPPPPPLPGNSKPPRSLLPPLQPLSISKRSVEEWPSAGSDDLGVWPLPQTPRGSIRAYEPNKDFQFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHQLLSRNGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSTTLVIAYLMWREGQSFEDAFQFVKTARAVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRMAPHSPYDPLHLVPKMVNQPGVQALDSRGAFIIHIPSAIYVWIGKHCNSVMSCNARSAAFQVIRYERAKGPILSIHEDEEPPGFWGALADTSDKAGVKEEPPVLNSESMEIADAVNMGIGPRKVDAYDLDFEIFHKALAGGVVPPFSVYNAESETCLPAREHGWARLRRKFASGVMKELLASPKWNCDATSSNDKCSVIVEEENIDSVADPLSPSSNHPCGSPDSFECSPNDSLGRAKDTVEAMDFSGPGVASLLPLSPPGTSNSFPCFLSSSPKFNSKSPTLSPSSSDYASSFTFSPSSTNWSDLSFVSSRQPSPSGLESTEPFYDKDVSFSGSSSLLHKEDVSSPSESFLANHTMGGANSNLPRKGSFLSIAERRGNPPPRMLLSSINESSHVHKNLVRSQSFSLPDLDDNMMKDDGCKQSDHENNGKWLVSDDGIISSGVESQGEINDIEEHGTTVCNMMAELEVEEKVN. 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02528 744 MobiDBLite consensus disorder prediction 479 505 - -
Seca5g02528 744 Pfam Dual specificity phosphatase, catalytic domain 124 254 IPR000340 GO:0008138|GO:0016311
Seca5g02528 744 MobiDBLite consensus disorder prediction 1 20 - -
Seca5g02528 744 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 106 258 IPR029021 -
Seca5g02528 744 Gene3D Protein tyrosine phosphatase superfamily 98 258 IPR029021 -
Seca5g02528 744 PANTHER MKPA PROTEIN 15 669 - -
Seca5g02528 744 CDD DSP 117 251 - -
Seca5g02528 744 MobiDBLite consensus disorder prediction 1 61 - -
Seca5g02528 744 ProSitePatterns Tyrosine specific protein phosphatases active site. 200 210 IPR016130 GO:0016311|GO:0016791
Seca5g02528 744 SMART dsp_5 116 255 IPR020422 GO:0006470|GO:0008138
Seca5g02528 744 MobiDBLite consensus disorder prediction 480 500 - -
Seca5g02528 744 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 175 236 IPR000387 GO:0016311|GO:0016791
Seca5g02528 744 MobiDBLite consensus disorder prediction 578 597 - -
Seca5g02528 744 SUPERFAMILY Actin depolymerizing proteins 262 363 - -
Seca5g02528 744 Gene3D Severin 268 366 IPR029006 -
Seca5g02528 744 MobiDBLite consensus disorder prediction 37 59 - -
Seca5g02528 744 ProSiteProfiles Dual specificity protein phosphatase domain profile. 116 258 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02528 Seca-Chr5 70517338 70519572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02528 1 152 Protein tyrosine phosphatase (PTP) family AT3G55270 40.526 2.55e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02528 - - lja:Lj6g3v0574850.1 1100.89