Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02521 ATGGGTGTCTTCACATTCGTGCTGCGCAAATCCGGCGCCGAATGGAACGCAAAACAGTTCTCCGGCGACATTGAGGAGTCATCTCCGTCTACCTTCGAGATCCAAAGGAAGCTCGTTAAGGCTGCTCTCGCCGCCGATTCCTCCGGTGCCGTTCAGTCCTCTTTCTCTCTTGTTTCCCCCTCCTCTGCCGTTTTCCAGGTGATTGTGGGTGGTGCAGTATTTGTTGGAGGTGGTGCAGCTGCAGCAGCTGCTCCTGCAGGAGGTGCTGCCGCATCTGGCCAGGCTGCCCCTGCTGCGGAGAAGAAAGAAGAAAAAGTTGAGGAAGAGGAGGAGGATGATGATTTGGGATTGTCACTCTTTGATTAG 366 0.5464 MGVFTFVLRKSGAEWNAKQFSGDIEESSPSTFEIQRKLVKAALAADSSGAVQSSFSLVSPSSAVFQVIVGGAVFVGGGAAAAAAPAGGAAASGQAAPAAEKKEEKVEEEEEDDDLGLSLFD. 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02521 121 MobiDBLite consensus disorder prediction 105 121 - -
Seca5g02521 121 MobiDBLite consensus disorder prediction 90 121 - -
Seca5g02521 121 Pfam 60s Acidic ribosomal protein 64 120 - -
Seca5g02521 121 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED 1 121 IPR044252 GO:0003735|GO:0005840
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02521 Seca-Chr5 70378750 70381085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02521 1 69 Cytoplasmic Ribosomal Protein Gene Family AT4G25890 68.116 2.64e-28 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02521 K02942 - pda:103715526 96.6709