Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02515 ATGTCGAAACCGTGGGGTAACATCGGCGCGTGGGCCGCCGACTCCGAGCGTGCTGAAGCCGAGGAGCGTGAAGCCACCGCTTCTGCCACCGCCGAATCGCACAGCTTCCCCAGCCTCAAGGAGGCGGTGACGACCAAGCCGAAGAAAAGCAAGAAGACGATGTCGCTCATGGAGTTTAACGCCGTCGCCGCGTCGGAGTCTAGGGGCTTGACGCACGACGAGATGCTCCGCCTCCCTACCAGGCCCAAGGAACGTTCCTCCGACGAAATGCAATTAGATGGTGGTAGGTGGGGCGGAGGAGGGAGAAGATCCTACGGTGGATTCGACGATGAACAACGCAGAACGGGACCTCCTCCTTCTAGGGTTTCTGAATTCGATCAACCTTCAAGAGCTGACGAGGTTGATAATTGGGCTTCCGTGAAGAAACCTCTCCCTTCGTTTGATTCGGGTCGGCAGAACCGGTACGGGTCGCTCGGTGGTGGCGGGTCGAGGGCTGATGGGGTAGATAATTGGGGGGTTGGTAAGAAGCCTAGTTTTCCTGCTAGATCTTCCGGATTTGGTTCCGGGTTTCGTGATTCGGATCCGGATCCAGATCGATGGACCCGGAGCGAAAGGGAGCGACCTAGATTGGTGTTGGAACCTCCGAGTGTGAATGAAACGGTGGTGAAGCCGAATCCATTTGGGGCGGCGAGGCCTAGGGAGCAGGTTCTGGCTGAGAAGGGATTGGATTGGAAGAAGCTTGATTCGGAGTTTGATGCTAAGAAAACGAGTAGGCCTACGAGTGCTAACTCAAGCACCAGCAGGCCCTCCAGTGCTCAATCCAATCGTTCTGATGGTTCAATGTTGCAGGGTGCAACGGAAATTTTGGTGAAAGCAAAATCGAAAGTGAATCCCTTTGGCGATGCGAAACCTAGAGAAGTTTTGTTGGAGGAGCGAGGTCAGGATTGGAGGAAGATTGATCTTGAATTGGAACATCGCCGTGTTGACAGGACTGAAACAGCGGAGGAAAAAATGTTGAAAGAAGAAATTGATAACTTGAAGAAGGAACTTGAGAAAGAGTCAACAATAAATTCAAATAAGGAATCTATAGATGAGGCTGGTGAAGACCAAACCAGTATACGTGCAGTGTTACTCCAGAAAGAAACGGAACTGGAAGTTCTTATCCGTGATTTGGATGACAAAGTTCGTTTTGGGCAAAAGGCAACTGAAAGGCCAGGCTCTGCAGGAGGAAAGACTACTGGTTTTCCTGACAGGCCACCTTCTCAATCTGGCTCATTTGAGGATTCTAGAAATGTGGAGTTTGCAGATAGACCTCGATCCCGTGGCACTGGAGATGTGTGGATGCGCACTGGCGATGACAAAAGACCATTTCAAGGTAGCAGGGATAGAGGAGGTTTTCTGAGTAGCAGAGACTTGAATAGGTCAAGGTCAAGAGAGAGGTGGTGA 1446 0.5152 MSKPWGNIGAWAADSERAEAEEREATASATAESHSFPSLKEAVTTKPKKSKKTMSLMEFNAVAASESRGLTHDEMLRLPTRPKERSSDEMQLDGGRWGGGGRRSYGGFDDEQRRTGPPPSRVSEFDQPSRADEVDNWASVKKPLPSFDSGRQNRYGSLGGGGSRADGVDNWGVGKKPSFPARSSGFGSGFRDSDPDPDRWTRSERERPRLVLEPPSVNETVVKPNPFGAARPREQVLAEKGLDWKKLDSEFDAKKTSRPTSANSSTSRPSSAQSNRSDGSMLQGATEILVKAKSKVNPFGDAKPREVLLEERGQDWRKIDLELEHRRVDRTETAEEKMLKEEIDNLKKELEKESTINSNKESIDEAGEDQTSIRAVLLQKETELEVLIRDLDDKVRFGQKATERPGSAGGKTTGFPDRPPSQSGSFEDSRNVEFADRPRSRGTGDVWMRTGDDKRPFQGSRDRGGFLSSRDLNRSRSRERW. 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02515 481 MobiDBLite consensus disorder prediction 192 212 - -
Seca5g02515 481 Coils Coil 329 356 - -
Seca5g02515 481 MobiDBLite consensus disorder prediction 467 481 - -
Seca5g02515 481 MobiDBLite consensus disorder prediction 350 368 - -
Seca5g02515 481 MobiDBLite consensus disorder prediction 70 91 - -
Seca5g02515 481 MobiDBLite consensus disorder prediction 430 460 - -
Seca5g02515 481 MobiDBLite consensus disorder prediction 256 282 - -
Seca5g02515 481 MobiDBLite consensus disorder prediction 236 255 - -
Seca5g02515 481 Pfam Plant specific eukaryotic initiation factor 4B 95 464 IPR010433 GO:0003743
Seca5g02515 481 Pfam Plant specific eukaryotic initiation factor 4B 1 92 IPR010433 GO:0003743
Seca5g02515 481 MobiDBLite consensus disorder prediction 350 371 - -
Seca5g02515 481 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 480 IPR010433 GO:0003743
Seca5g02515 481 MobiDBLite consensus disorder prediction 395 481 - -
Seca5g02515 481 MobiDBLite consensus disorder prediction 1 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02515 Seca-Chr5 70256056 70260923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02515 1 481 Eukaryotic Initiation Factors Gene Family AT3G26400 50.358 2.39e-135 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02515 - - gmx:100784238 546.969