Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02513 ATGGGTCTCTCAAATTTCCCGTGTTCAGCTGAAGGGGTGCTACCTGTGCTTGTGATGAACACAGTCCTTTCAGTGGCTCTGTTGAAGAACATGTTTAGATCCATGCTCCAAGTAATTGGTGGCTCTTATTATTCTCCTTCTTCTCCTTCAGATGAGTCCCACATCGATGAGATTGAGAGTTGTTCAAGGGAAAGGAGGGTGTCAATTAGCCAGTACAAGTCATTGTGCCACAGCATAGGAAGAAGAACGGTTATGGTGGAGTGCTGCGTGTGTCTGTGTGGTTTTGAAGCGAATCAAGAGGTGAGCGAGTTGCCTTGTAAGCATTTCTTCCATAGAGGATGCTTAGACAAATGGTTTGATAACAAACATACCACTTGCCCTCTGTGTCGTTCCAAGGACTAG 402 0.4552 MGLSNFPCSAEGVLPVLVMNTVLSVALLKNMFRSMLQVIGGSYYSPSSPSDESHIDEIESCSRERRVSISQYKSLCHSIGRRTVMVECCVCLCGFEANQEVSELPCKHFFHRGCLDKWFDNKHTTCPLCRSKD. 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02513 133 SMART ringv_2 87 130 IPR011016 GO:0008270
Seca5g02513 133 SUPERFAMILY RING/U-box 87 131 - -
Seca5g02513 133 SMART ring_2 88 129 IPR001841 -
Seca5g02513 133 Pfam Ring finger domain 87 130 IPR001841 -
Seca5g02513 133 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Seca5g02513 133 PANTHER - 1 132 IPR044249 -
Seca5g02513 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 133 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02513 Seca-Chr5 70190845 70191246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02513 1 131 C3H Transcription Factor Family AT2G04240 31.373 4.87e-22 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02513 K16285 - gmx:100811790 196.823