LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g02491	ATGTGCTTGATATTGGTCGGTTTAACCTCTGTAGGTCTGCTCATGCTCATGTTATCACTCTACATCCGCCATTGCACCGAACATTTCAACAGCGGCCGCCACACCGTAACGGATCATTGCACCCGCGGCTTCAACCGCGAGATCATCGACAAGTGCCCTGTCTTTCCTTACTCCACCATCAAAGATCTCAAAATCGGGAGAGGAACACTCGAATGTGCGGTGTGCTTGACGGAGTTTGAAGACACGGACAACGTGCGTTTTCTCCCAAAATGCAACCACGTTTTCCACCAAGATTGTATTGATGTCTGGTTACAATCTCACATGAATTGCCCCGTTTGTCGCAATAACCTCACCTCCGACGTCGTTTCAATTGACATCCCAAATCAAGAAGAAGGACAGAGCAGCAGAAACAATGTTGTTGTTATTGGTGAGCCAGAAGTTGAACCTGAACCTGAACCTGACAGTACTGACAGTAACGGTACTGCACGGGAATCGAGAATGTTGGAGAAGCTTCCTCGCTCACATTCGACAGGTCATTCTTTGGAGGAGAGGTACACTCTGAGGTTGCCTGAGGAAGTGAGGAGGAATATTCTTGGGAATCATGGGAGGATGCGGAGTAGTGATGGTGTGATACTGCCAGGTGCATGGAGTGGGAAGAACGTGGAGCGGTGGTCATTGTCCATGTCTCCGACTTGTTGGATGCCAGTGGTTTGCCAGGGAGCTTCAACCAGTACTCTTCCGGTTTGA	747	0.4926	MCLILVGLTSVGLLMLMLSLYIRHCTEHFNSGRHTVTDHCTRGFNREIIDKCPVFPYSTIKDLKIGRGTLECAVCLTEFEDTDNVRFLPKCNHVFHQDCIDVWLQSHMNCPVCRNNLTSDVVSIDIPNQEEGQSSRNNVVVIGEPEVEPEPEPDSTDSNGTARESRMLEKLPRSHSTGHSLEERYTLRLPEEVRRNILGNHGRMRSSDGVILPGAWSGKNVERWSLSMSPTCWMPVVCQGASTSTLPV.	249

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g02491	248	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	32	120	IPR013083	-
	Seca5g02491	248	MobiDBLite	consensus disorder prediction	143	183	-	-
	Seca5g02491	248	SUPERFAMILY	RING/U-box	71	120	-	-
	Seca5g02491	248	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL42	8	135	-	-
	Seca5g02491	248	SMART	ring_2	72	113	IPR001841	-
	Seca5g02491	248	CDD	RING-H2_EL5-like	71	114	-	-
	Seca5g02491	248	ProSiteProfiles	Zinc finger RING-type profile.	72	114	IPR001841	-
	Seca5g02491	248	Pfam	Ring finger domain	71	114	IPR001841	-
	Seca5g02491	248	MobiDBLite	consensus disorder prediction	157	183	-	-
	Seca5g02491	248	FunFam	E3 ubiquitin-protein ligase ATL6	32	120	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g02491	Seca-Chr5	69473526	69474293	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g02491	1	223	Rapid Response to Elicitors	AT3G05200	38.800	1.72e-46	157

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g02491	K10664		-	cit:102623318	171.785

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