Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02491 ATGTGCTTGATATTGGTCGGTTTAACCTCTGTAGGTCTGCTCATGCTCATGTTATCACTCTACATCCGCCATTGCACCGAACATTTCAACAGCGGCCGCCACACCGTAACGGATCATTGCACCCGCGGCTTCAACCGCGAGATCATCGACAAGTGCCCTGTCTTTCCTTACTCCACCATCAAAGATCTCAAAATCGGGAGAGGAACACTCGAATGTGCGGTGTGCTTGACGGAGTTTGAAGACACGGACAACGTGCGTTTTCTCCCAAAATGCAACCACGTTTTCCACCAAGATTGTATTGATGTCTGGTTACAATCTCACATGAATTGCCCCGTTTGTCGCAATAACCTCACCTCCGACGTCGTTTCAATTGACATCCCAAATCAAGAAGAAGGACAGAGCAGCAGAAACAATGTTGTTGTTATTGGTGAGCCAGAAGTTGAACCTGAACCTGAACCTGACAGTACTGACAGTAACGGTACTGCACGGGAATCGAGAATGTTGGAGAAGCTTCCTCGCTCACATTCGACAGGTCATTCTTTGGAGGAGAGGTACACTCTGAGGTTGCCTGAGGAAGTGAGGAGGAATATTCTTGGGAATCATGGGAGGATGCGGAGTAGTGATGGTGTGATACTGCCAGGTGCATGGAGTGGGAAGAACGTGGAGCGGTGGTCATTGTCCATGTCTCCGACTTGTTGGATGCCAGTGGTTTGCCAGGGAGCTTCAACCAGTACTCTTCCGGTTTGA 747 0.4926 MCLILVGLTSVGLLMLMLSLYIRHCTEHFNSGRHTVTDHCTRGFNREIIDKCPVFPYSTIKDLKIGRGTLECAVCLTEFEDTDNVRFLPKCNHVFHQDCIDVWLQSHMNCPVCRNNLTSDVVSIDIPNQEEGQSSRNNVVVIGEPEVEPEPEPDSTDSNGTARESRMLEKLPRSHSTGHSLEERYTLRLPEEVRRNILGNHGRMRSSDGVILPGAWSGKNVERWSLSMSPTCWMPVVCQGASTSTLPV. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02491 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 120 IPR013083 -
Seca5g02491 248 MobiDBLite consensus disorder prediction 143 183 - -
Seca5g02491 248 SUPERFAMILY RING/U-box 71 120 - -
Seca5g02491 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 8 135 - -
Seca5g02491 248 SMART ring_2 72 113 IPR001841 -
Seca5g02491 248 CDD RING-H2_EL5-like 71 114 - -
Seca5g02491 248 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Seca5g02491 248 Pfam Ring finger domain 71 114 IPR001841 -
Seca5g02491 248 MobiDBLite consensus disorder prediction 157 183 - -
Seca5g02491 248 FunFam E3 ubiquitin-protein ligase ATL6 32 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02491 Seca-Chr5 69473526 69474293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02491 1 223 Rapid Response to Elicitors AT3G05200 38.800 1.72e-46 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02491 K10664 - cit:102623318 171.785