Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02487 ATGAAGAAAACCCCTCACCCCAACCCCAACGCCACCGGGCGCCGCCCCCCGGAGTTCCACCGTCAACCACCACCTGGCGGTTGGAATTCCCGCCCCTTTCACCATTCCTACCATTACCGAAAGCCCGGATTCCACTTCAACCACCGCTTCGACCGCCCTCCGGAGCGCAATTCCCCTCTCCGCCTCCCCAATTTCGTCGTGGAGCTTCGCCTCGGCCGCCGCGAGCTTTGCCGTGACGACGTCGAGTCCCTCATCGGCGAATGCAAGCCCAAGCCGGAGAATTTCATCTTCTACCCCGGCGACTGTGTCGCCGCCTCTCTCAATTTCCGGCAATTAACGGACGCGCTCGACGCCGTCGTTTGGTTCTGGGAATCGCGCCTCTCTGAGGCCCATGATTTCACGCCGGCGCTCACGCCGATCAACGTTCTCTTGCCCGCTGATAGGGATGATCTCGAAGGTCGCCTCCGAACCCTCTTCACGAGCCACGTGAAGGGGTTGATGGAAGGCAAGGAGGTGAAGCGGTGGGTAGCAGAGATTGAGAGGCTATCGAAGGAGATTGCGCGTGTTTTGAAGATGTTGCGTAGTCCCTTGCCAATTGGCGTGGCTGACCAGCACATTCAGAAAAGGAATGGCCTTGAAACTGAGAAGAGACTTGCTGAAAGGAGAGTAACGGAGTTTGAGTCTGCAATGCAGTGCATATTGCAGTATCTGGAGGAGAATGACGTGGAGGGTGGTGAGGATGTTGTACATGTGTTTAGGTTTGATGGAAGGTTGAATTGGAAGCAGATTCACTCCCTAATCACCAGGGAGCGTCGCAGACTTGAAGAAGGATTGCCTATTTATGCTTACCGGAGGGATATTCTTCAGGAAATACATCATCAACAGATAACGGTATTAATTGGAGAGACCGGATCTGGGAAGAGTACACAGTTGGTACAGTTTCTCGCTGATTCAGGCATTGGTGCTGGTGAGTCCATCGTGTGCACTCAGCCTCGCAAGATTGCTGCCAAATCTTTGGCTCAAAGGGTCCAGGAAGAAAGCAGTGGATGTTATGAAGACAATTCAGTCAAGTGCTATTCTACATTTTCATCCTTGCACGAGTTTGACTCCAGGATAACATTTATGACAGATCACTGTTTATTGCAGCATTACATGAGTGATAAGGATTTGTCTGGGGTCTCGTGTATCATAATTGATGAGGCTCATGAAAGGAGCTTAAATACTGATCTACTGTTGGCATTGATAAAGAATTTACTTTGTAGGAGGGTTGAAATGCGGCTTATTATTATGTCTGCTACGGCTGATGCAAAGCAGCTATCTGATTACTTCTATGGTTGTGGAATTTTTCGTGTGCTTGGAAGAAGCTTTCCTGTGGAGGTGAGGTATGTTCCTTCTGACTATGCAGGACATTCTGATTCTGCTGTTGTGGCCTCATATGTTTATGACGTTGTCAGAATGGCAACTGAGGTTCACAAAACAGAGAAAGAGGGAACTATTCTTGCCTTTTTGACCTCACAGATAGAAGTAGAATGGGCCTGTGAAAAGTTTGAAGCTCTCTCTGCAGTTGCTTTGCCCTTACATGGAAAACTTTCGTCTGAAGAGCAATTTCATGTTTTCCAGAACTACCCTGGAAAAAGGAAAGTTATATTTTCAACAAATCTTGCAGAGACATCACTTACAATTCCTGGTGTTAAGTATGTGATAGATTCTGGGTTGGTCAAAGACAGTCGATTTGATCCTGGCAGTGGGATGAATGTACTCAAGGTTTGCTGGATCAGCAAGAGCTCTGCTGATCAACGGATGGGTCGTGCTGGGAGGACTGAGCCTGGTAGGTGCTATAGGCTGTATTCAGATGCTGGTTACCAGTCCATGGAACTAAATCAAGAACCTGAGATTCGAAGGGTTCATCTTGGTGTAGCAGTGTTAAAGATCCTTGCTTTAGGAGTAAAGGATGTGCTGGATTTTGATTTTGTGGATGCTCCAAGCCCTAGCTCTATTGAGATGGCAATCAGGAATCTAATTCAGTTAGGAGTCATTAAACTGAACAATAATGTCCATGAATTAACTATTGAAGGTAGATACTTGGTAAGAATGGGGATCGAACCTAGGCTTGGTAAACTTATTCTTGGCTGTTTCCGACATGGTTTGGGTAGAGAAGGCCTTGTCCTTTCTGCAATGATGGCCAATGCTAGTAGCATATTTTGCAGAGTTGGTAATGAAAGTGATAAACAAAGATCTGATTGTCTCAAAGTGAAATTTTGCCATCGCGATGGTGACCTCTTCACTCTTCTTTCTGTGTATAAGGAATGGGAAGCTTTGCCTCGAGACAGGAAGAACAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCTATGAGGAGATGCCAAGACACAATTTTGGAGTTAGAATCTTGCCTTGAGCGTGAACATGGCTTAGTTACTCCAACTTACTGGCGTTGGGACCCTCATATGCCCTCTGATCATGATAAGAATATGAAAATAGTTATACTTTCCTCACTTGCTGATAATGTAGCCATGTACTCTGGGTGCAATCAACTTGGTTATGAAGTGGCACAAACTGGCCAGCATGTTCAACTACATCCGTCTTGTTCATTGCTTGTATTTGCTCAGAGACCTAGTTGGGTGGTTTTTGGCGAGCTGCTTTCAGTTTCTAATGAATATTTGGTCTGTGTAACTGCTTTTGACTTTCAATCATTGTACAAACTTTGCCCTCCTCCCTTGTTTGATGTGTCCAAGATAGAAGAGCAGAAGTTGCAAATGATGAGATTGACTGGTTTTGGCTCTATTCTTCTCAAGAGATTTTGTGGGAAAGCAAATAGTAATTTGCTTGGTCTTGTTTCGCGTATAAAGAAAGCTTGTATGAAGGAGTGTATCTTCATTGAAGTGAATTTTGACCAGAATGACATCCAGGTATATGCCACTTCGCATGATATGAATACAGCCCTTAGGTTGGTTAATGATACTTTAGAATATGAGAAGAAGCGGTTACATACTGAATGTTTGGAGAAATATTTGTATCATGGGTCTGGTTTCTCATCACCTGTAGCTTTGTTTGGATCTGGTGCTGAGATAAAGCATTTGGAACTTGAGAAACGTTCCTTGAGTGTTGATGTGTGTCATCCAAACATGAATGCAATTGAAGACAAGGAGCTCTTGATGTTTTTTGAGAAGAATACCCTGGGTTGTATCTGTGCTGTGCATAAGTTCACAGGCTCATCGAAGGATGTTGAAGATAGAGAAAAGTGGTGCAGGATAACATTTCTGTCTCCTGATGGTGCCAAAAGAGCAGCTGAGCTGGATGGAGAGAAGTTCTGTGGCTCATCCTTGAAAATTGTTCCTTCACAATCAGCCATGGGAGGTGATAAAACATTTTCATTTCCTGCTGTTAAAGCAAAGATTTATTGGCCCCGAAGGCTTAGCAAGGGATTTGCCATAGTTAAATGTGATATAAACGATGTCAAATTCATCTTGAGAGATTTTTATAACCTTGCTATTGGAGGAAGGTATGTTCGATGTGAAACTAGCAACAAGTATATGGATAGTGTTGTGATAAGTGGGCTTGACAGAGAGCTGTCAGAAGCTGAAATTTTGGATGTACTAAGAACCTCTACAAGTAGAAGGATTCTGGATTTTTTCTTGGTGAGAGGAGAGGCTGTTGGAAATCCACCATGCAGTGCTTGTGAAGAGGCTCTCCTAAAAGAAATTTCTCCCTTGATGCCGAAAAGAAACCCCCACATTAGTTCTTGTCGAATTCAGGTGTTTCCACCTGAGCCGAAGGATGCTTTCATGAGAGCTTTAATCACTTTTGATGGCAGATTACATTTAGAGGCGGCAAAAGCTTTGGAGCAAATTGAAGGAAAGGTGCTGCCTGGATGTCTTTCTTGGCAGAAGATAAAGTGCCAGCAGTTGTTTACTAGCTCCTTGACATTTCCTAGTCCAGTGTATCGTGTGATTAAGGAACAACTGGAGAAAGTACTTGCAAGCTTCAAAAATTTAAAGGGTCTTGACTGGAACCTGGACAGAACTGCCAGTGGTTCCCAACGAGTGAAGATAACAGCAAATGCCACAAAGACAGTGGCAGAAGTTAGGAGACCTCTGGAAGAACTATCCAGAGGGAAAACCATTGTCCACGAAAGCCTCACCCCTGCAGTTCTACAGCTCATGTTGTCCAAAGATGGCCTTAGTCTTAAAAGTTCAATACAGCAAGAGACAGGAACTTACATTCTTGTTGACAGGCAAAGCCATAGTTTACGGATATTTGGTTCCCCAAACAACATTGCTTTGGCACAGCAGAAGGTGATTCATTCCCTACTCTCTCTCCATGAAGGAAAGCAGTTAGAAATCCATCTGAGAGGGAGGGATCTACCTCCTGACTTGATGAAGCAAGTGGTTGAGAATTTCGGGCCAGATCTCCATGGACTAAAGGAGAAGATACCTGGGGCAGATTTTACACTCAACACACGCCGCCAGATGATCTTTCTTCATGGTAACAAAGAGCTAAAACCAAGAGTAGAAGAAATAATTTTTGAGATTGCTCGTGCAAGCTATCATTTGGTTGAGAGACATGACTCTGGACCTAGCTGCCCAATTTGCTTGTGCGAGGTTGAGGATGGGTACCAGCTTGAAGGCTGTGGTCATTTGTTCTGCCGTTTGTGTCTGGTGGAGCAATGTGAATCTGCTATTAAAAACCAAGGTAGTTTCCCAATATGTTGTGCTCAGGAGGGCTGTGGAGATCCTATTCTGCTGACGGATTTGAGATCTCTCTTATTAAATGATAAGTTGGAGGAGCTTTTCAGGGCTTCCTTGGGAGCTTTTGTGGCATCGAGTGGGGGAACTTACAGGTTTTGCCCGTCTCCTGATTGCCCCTCAGTTTATCAAGTTGCGGATCCTGATACACCTGGTGAGCCATTTGTTTGTGGGGCATGTTATTCAGAGACATGTACCAGGTGCCACTTAGAGTATCATCCATACCTTTCATGCGAGAGATATCAAGAATTCAAGGAAGATCCAGACTCATCTCTGAAGGAGTGGTGCAAAGGGAAAGATCAAGTTAAGAGCTGCTCAGCGTGTGGATATGTAATTGAGAAGATTGATGGGTGCAACCACATTGAGTGCAAGTGTGGAAAGCATGTCTGCTGGGTTTGCTTGGAGATCTTTACAAGCAGTGATGAGTGTTATAACCATTTGAGAACTATACACATGGCCATCATATAA 5235 0.4466 MKKTPHPNPNATGRRPPEFHRQPPPGGWNSRPFHHSYHYRKPGFHFNHRFDRPPERNSPLRLPNFVVELRLGRRELCRDDVESLIGECKPKPENFIFYPGDCVAASLNFRQLTDALDAVVWFWESRLSEAHDFTPALTPINVLLPADRDDLEGRLRTLFTSHVKGLMEGKEVKRWVAEIERLSKEIARVLKMLRSPLPIGVADQHIQKRNGLETEKRLAERRVTEFESAMQCILQYLEENDVEGGEDVVHVFRFDGRLNWKQIHSLITRERRRLEEGLPIYAYRRDILQEIHHQQITVLIGETGSGKSTQLVQFLADSGIGAGESIVCTQPRKIAAKSLAQRVQEESSGCYEDNSVKCYSTFSSLHEFDSRITFMTDHCLLQHYMSDKDLSGVSCIIIDEAHERSLNTDLLLALIKNLLCRRVEMRLIIMSATADAKQLSDYFYGCGIFRVLGRSFPVEVRYVPSDYAGHSDSAVVASYVYDVVRMATEVHKTEKEGTILAFLTSQIEVEWACEKFEALSAVALPLHGKLSSEEQFHVFQNYPGKRKVIFSTNLAETSLTIPGVKYVIDSGLVKDSRFDPGSGMNVLKVCWISKSSADQRMGRAGRTEPGRCYRLYSDAGYQSMELNQEPEIRRVHLGVAVLKILALGVKDVLDFDFVDAPSPSSIEMAIRNLIQLGVIKLNNNVHELTIEGRYLVRMGIEPRLGKLILGCFRHGLGREGLVLSAMMANASSIFCRVGNESDKQRSDCLKVKFCHRDGDLFTLLSVYKEWEALPRDRKNKWCWENSINAKSMRRCQDTILELESCLEREHGLVTPTYWRWDPHMPSDHDKNMKIVILSSLADNVAMYSGCNQLGYEVAQTGQHVQLHPSCSLLVFAQRPSWVVFGELLSVSNEYLVCVTAFDFQSLYKLCPPPLFDVSKIEEQKLQMMRLTGFGSILLKRFCGKANSNLLGLVSRIKKACMKECIFIEVNFDQNDIQVYATSHDMNTALRLVNDTLEYEKKRLHTECLEKYLYHGSGFSSPVALFGSGAEIKHLELEKRSLSVDVCHPNMNAIEDKELLMFFEKNTLGCICAVHKFTGSSKDVEDREKWCRITFLSPDGAKRAAELDGEKFCGSSLKIVPSQSAMGGDKTFSFPAVKAKIYWPRRLSKGFAIVKCDINDVKFILRDFYNLAIGGRYVRCETSNKYMDSVVISGLDRELSEAEILDVLRTSTSRRILDFFLVRGEAVGNPPCSACEEALLKEISPLMPKRNPHISSCRIQVFPPEPKDAFMRALITFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQQLFTSSLTFPSPVYRVIKEQLEKVLASFKNLKGLDWNLDRTASGSQRVKITANATKTVAEVRRPLEELSRGKTIVHESLTPAVLQLMLSKDGLSLKSSIQQETGTYILVDRQSHSLRIFGSPNNIALAQQKVIHSLLSLHEGKQLEIHLRGRDLPPDLMKQVVENFGPDLHGLKEKIPGADFTLNTRRQMIFLHGNKELKPRVEEIIFEIARASYHLVERHDSGPSCPICLCEVEDGYQLEGCGHLFCRLCLVEQCESAIKNQGSFPICCAQEGCGDPILLTDLRSLLLNDKLEELFRASLGAFVASSGGTYRFCPSPDCPSVYQVADPDTPGEPFVCGACYSETCTRCHLEYHPYLSCERYQEFKEDPDSSLKEWCKGKDQVKSCSACGYVIEKIDGCNHIECKCGKHVCWVCLEIFTSSDECYNHLRTIHMAII. 1745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02487 1744 SUPERFAMILY RING/U-box 1533 1599 - -
Seca5g02487 1744 ProSitePatterns Zinc finger C2H2 type domain signature. 1719 1740 IPR013087 -
Seca5g02487 1744 CDD SF2_C_RHA 456 616 - -
Seca5g02487 1744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 785 IPR027417 -
Seca5g02487 1744 FunFam RBR-type E3 ubiquitin transferase 651 757 - -
Seca5g02487 1744 SMART helicmild6 510 608 IPR001650 -
Seca5g02487 1744 CDD Rcat_RBR_DEAH12-like 1690 1740 - -
Seca5g02487 1744 Gene3D - 630 673 IPR042035 -
Seca5g02487 1744 SMART ha2_5 668 764 IPR007502 GO:0004386
Seca5g02487 1744 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 834 911 IPR011709 -
Seca5g02487 1744 ProSiteProfiles TRIAD supradomain profile. 1531 1739 IPR044066 -
Seca5g02487 1744 ProSiteProfiles Zinc finger RING-type profile. 1535 1577 IPR001841 -
Seca5g02487 1744 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1663 1741 - -
Seca5g02487 1744 SMART ibrneu5 1668 1732 IPR002867 GO:0008270
Seca5g02487 1744 SMART ibrneu5 1602 1667 IPR002867 GO:0008270
Seca5g02487 1744 Gene3D - 1645 1742 - -
Seca5g02487 1744 Gene3D - 455 627 IPR027417 -
Seca5g02487 1744 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 288 452 IPR014001 -
Seca5g02487 1744 Pfam IBR domain, a half RING-finger domain 1611 1667 IPR002867 GO:0008270
Seca5g02487 1744 PANTHER ATP-DEPENDENT RNA HELICASE 271 914 - -
Seca5g02487 1744 CDD BRcat_RBR 1619 1670 - -
Seca5g02487 1744 SUPERFAMILY RING/U-box 1689 1737 - -
Seca5g02487 1744 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 455 627 - -
Seca5g02487 1744 MobiDBLite consensus disorder prediction 1 32 - -
Seca5g02487 1744 Pfam DEAD/DEAH box helicase 286 439 IPR011545 GO:0003676|GO:0005524
Seca5g02487 1744 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 394 403 IPR002464 -
Seca5g02487 1744 Coils Coil 202 229 - -
Seca5g02487 1744 Pfam Helicase conserved C-terminal domain 491 607 IPR001650 -
Seca5g02487 1744 CDD DEXHc_RHA-like 295 451 - -
Seca5g02487 1744 SMART ultradead3 276 461 IPR014001 -
Seca5g02487 1744 Coils Coil 172 192 - -
Seca5g02487 1744 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1531 1611 IPR013083 -
Seca5g02487 1744 Pfam Helicase associated domain (HA2) 669 763 IPR007502 GO:0004386
Seca5g02487 1744 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 482 648 IPR001650 -
Seca5g02487 1744 SUPERFAMILY RING/U-box 1618 1673 - -
Seca5g02487 1744 ProSitePatterns Zinc finger RING-type signature. 1551 1560 IPR017907 -
Seca5g02487 1744 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 261 454 - -
Seca5g02487 1744 Gene3D - 258 454 IPR027417 -
Seca5g02487 1744 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 630 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02487 Seca-Chr5 69196359 69203975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02487 1550 1726 C3H Transcription Factor Family AT2G31770 27.027 4.74e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02487 K12818 - gmx:100810008 2793.84