Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02485 ATGAAGAGACTCAACAACTCATCAGATTCTTCCGGTGCTCTCATGACAATCTGTCCATCAACAGATTTAGACGAACACAGTCCAAGCAACAACCATGTGTATGGTAGAGAGTTCCAATCGATGCTGGATGGACTTGATGAGGAAGGGTGTATTGAAGAACCAGGACACCACTCCGAGAAGAAGCGTAGACTAAACATCGATCAAGTCAAGGCTTTAGAGAAGAACTTCGAGGTAGAAAACAAGCTTGAACCTGAGAGAAAAGTGAAGCTTGCACAAGAACTTGGGTTGCAGCCTAGACAAGTAGCTGTTTGGTTCCAAAACCGTCGAGCTAGATGGAAAACCAAACAATTGGAGAGAGATTATGGCGTTCTCAAAGCCAATTATGATGCACTTAAGCTTAACTTTGATGCTCTCAATAAGGACAATGAATCCTTACACAAGGAGATTAAGGAACTGAAATCAAGGTTGCAAGAAGGGATTAACACTACAAGCGGTGTTTCGGTGAAGGAAGAGATAACGATGAAGCCTAATTCAGAAGACAACAAAATAATTGAAAGGAGTAAGAGTAAGAATAAGAGCAACAACCCTTCTGCTGAAAACTCTGTTCCTGGTTCAGAGTCAAAGGATCAATTGAATTACGACTGTTTCAAAAGCAACGATGATGTTGGAGCCGCTTCACTCTTCAAAGACGGTTCTTCTGACAGCGACTCAAGCGCAATCTTGAATGAAGACAATAGCCCCAAAGCAGCTATTTCTTCATCTGGGGTTCTTCAAAATCACAACTTTTTGTTATCCCCTGATGATGAGTCTTCTCCATTGAAATTCAATTGCTCTATATTGTCATCGTCTTCCTTCATGAACTGCTTTCAATACCAGAAACCGTACCAGGCACAGTATGTGAAGATGGAAGAGCACAATTTCTTGAGTGCAGATGAGGCCTGCAATTTTTTCTCAGATGAGCAAGCACCGACCCTTCATTGGTACTGTCCAGACCAGTGGAGTTAA 1005 0.4209 MKRLNNSSDSSGALMTICPSTDLDEHSPSNNHVYGREFQSMLDGLDEEGCIEEPGHHSEKKRRLNIDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNFDALNKDNESLHKEIKELKSRLQEGINTTSGVSVKEEITMKPNSEDNKIIERSKSKNKSNNPSAENSVPGSESKDQLNYDCFKSNDDVGAASLFKDGSSDSDSSAILNEDNSPKAAISSSGVLQNHNFLLSPDDESSPLKFNCSILSSSSFMNCFQYQKPYQAQYVKMEEHNFLSADEACNFFSDEQAPTLHWYCPDQWS. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02485 334 Pfam Homeobox associated leucine zipper 115 157 IPR003106 GO:0006355|GO:0043565
Seca5g02485 334 CDD homeodomain 60 116 IPR001356 GO:0003677
Seca5g02485 334 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
Seca5g02485 334 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 52 284 IPR045224 GO:0003700
Seca5g02485 334 Coils Coil 114 162 - -
Seca5g02485 334 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Seca5g02485 334 MobiDBLite consensus disorder prediction 1 32 - -
Seca5g02485 334 SMART HOX_1 58 119 IPR001356 GO:0003677
Seca5g02485 334 MobiDBLite consensus disorder prediction 173 189 - -
Seca5g02485 334 Pfam Homeodomain 60 113 IPR001356 GO:0003677
Seca5g02485 334 MobiDBLite consensus disorder prediction 190 210 - -
Seca5g02485 334 FunFam Homeobox-leucine zipper protein HAT5 53 117 - -
Seca5g02485 334 SUPERFAMILY Homeodomain-like 42 117 IPR009057 -
Seca5g02485 334 PRINTS Lambda-repressor HTH signature 86 95 IPR000047 GO:0003677
Seca5g02485 334 PRINTS Lambda-repressor HTH signature 95 111 IPR000047 GO:0003677
Seca5g02485 334 MobiDBLite consensus disorder prediction 167 210 - -
Seca5g02485 334 Gene3D - 55 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02485 Seca-Chr5 69093429 69095476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02485 1 333 Homeobox Transcription Factor Family AT2G22430 46.409 6.76e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca5g02485 Homeodomain 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02485 K09338 - qsu:112039557 435.647