Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02476 ATGCTCAATGGTGAACACGAGTTACCTTCATTGGCAGCCACTTTAGGCAGGTATGTGGCACTTCGCCTTTGTGATTTAAAGCCTTCTAACATCCTTTTAGATAGACACTGGGAAGCTCATGTCAGTGATTTTGGGACAGCTAGAATACTTGGTCTTCATCTGCAAGATGGTAGTACCCTTTCCTCATCAGCAGCTTTGCAAGGCACAGTTGGCTATTTGGCACCGGGCAGCAGTGCTGGGAAAGTAGGCACTCTAGCAGTTGACAAAGCTGTAGATGACATATTGGCTACGGATGAGAAATACAATGAAGCTATTTTTAGCACTGCTAAACGGCTAGTTGCTGCCATTGAAGGGCCTCCAGATCCTATGACCGGGACTGTTTTGTTGATTGCAGACAATATTGTTATCTGCAATGCATTTGTGGTGAGACCTGGACTCAACAAACTGCAGGATGAAATTTCAAGCCCAATTAGTGCAAGAATTTTTGTACTCTGTGACCCTGAATTGTTCCCGGAGTCTCTGCAGAATTCTGAGGTTGCCTTTAGGACTAATGTATTTCACCCAAACATTAACAGTAATGGCAGTATATGTCTCGACATTCTTAAAGAACAATGTAGCCCAGCACTAACCATTTCCCAGGTTTGGTTTTACTTTGCTTGTTTACCTTGA 669 0.435 MLNGEHELPSLAATLGRYVALRLCDLKPSNILLDRHWEAHVSDFGTARILGLHLQDGSTLSSSAALQGTVGYLAPGSSAGKVGTLAVDKAVDDILATDEKYNEAIFSTAKRLVAAIEGPPDPMTGTVLLIADNIVICNAFVVRPGLNKLQDEISSPISARIFVLCDPELFPESLQNSEVAFRTNVFHPNINSNGSICLDILKEQCSPALTISQVWFYFACLP. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02476 222 ProSiteProfiles Protein kinase domain profile. 1 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02476 222 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 186 201 IPR023313 -
Seca5g02476 222 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 103 222 IPR000608 -
Seca5g02476 222 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 24 75 - -
Seca5g02476 222 Pfam Ubiquitin-conjugating enzyme 176 215 IPR000608 -
Seca5g02476 222 Gene3D Ubiquitin Conjugating Enzyme 100 221 IPR016135 -
Seca5g02476 222 SUPERFAMILY UBC-like 178 217 IPR016135 -
Seca5g02476 222 Gene3D Transferase(Phosphotransferase) domain 1 23 92 - -
Seca5g02476 222 SUPERFAMILY Protein kinase-like (PK-like) 24 88 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02476 Seca-Chr5 68913148 68916178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02476 24 75 Receptor kinase-like Gene Family AT5G46330 69.231 1.51e-16 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca5g02476 UQ_con 2.4e-10 CL0208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02476 K13420 - gmx:102663839 102.449