Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g02464 ATGGAAGAACGGTATGAGATTATTAAAGAAATTGGGTCAGGAAACTTTGGGGTAGCAAAGCTGGTAAAGGAGAAACGAAGTGGTGAGCTATATGCTGTCAAGATCATTGAGAGAGGCCAAAAGATTGATGAGCATGTGCAAAGGGAGATTATAAATCACAGGTCCTTGAAACATCCCAATATCATTAGATTTAAGGAGGTGTTGTGTACTCCAACTCATCTAGCCATAGTCATGGAATATGCTGCAGGGGGAGAATTGTTTGAAAGAATTTGCAATGCTGGTAGATTTTCTGAGGACGAGGCAAGATATTTCTTCCGGCAATTGATTTCTGGAGTCAGCTATTGCCATTCAATGGAAATTTGCCATAGAGATCTTAAGCTGGAAAACACACTCTTAGATGGAAGCTCAGCACCACAACTCAAAATATGCGACTTTGGTTACTCCAAGTCATCTGTTCTGCACTCTCAGCCTAAATCTACTGTGGGAACCCCAGCATATATTGCACCAGAGGTCTTGTCAAGAAGAGAATATGATGGGAAGGTTGCTGATGTTTGGTCTTGTGGGGTGACCTTATATGTGATGCTAGTTGGGGGTTATCCTTTTGAAGATCCAGATGATCCACGGAACTTCAGAAAAACACTTCAGAGAATTATTGGGGTCCACTATTCTGTTCCAGACTATGTTCGTATCTCCAAAGATTGTAGACACCTTCTATCTCGAATTTTTGTGGCCAATCCGGAGATGAGAATCAGCATCCCAGAAATTAAAATGCACCCATGGTTCCTCAATAACCTGCCCATGGAATTTGTGGATGAAGGGGAAGATAAGTTGTTGCAAAATGATGTGGATGATTCTCCTCAGAGTATTGAGGAAATATTGTCCATAATTCAAGAGGCAAGGAAGCCAGGTGAGGGCCTAAAAGTTGATGGGCAATTTGTGGGAGGTGGAATGGATCTTGATGAGATGGATTCAAATGATGATGATATAGAAACAAGTAGTGATTTTGATTTTGTTTGTTAA 1020 0.4108 MEERYEIIKEIGSGNFGVAKLVKEKRSGELYAVKIIERGQKIDEHVQREIINHRSLKHPNIIRFKEVLCTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFRQLISGVSYCHSMEICHRDLKLENTLLDGSSAPQLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKVADVWSCGVTLYVMLVGGYPFEDPDDPRNFRKTLQRIIGVHYSVPDYVRISKDCRHLLSRIFVANPEMRISIPEIKMHPWFLNNLPMEFVDEGEDKLLQNDVDDSPQSIEEILSIIQEARKPGEGLKVDGQFVGGGMDLDEMDSNDDDIETSSDFDFVC. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g02464 339 PANTHER SERINE/THREONINE KINASE 3 287 - -
Seca5g02464 339 SUPERFAMILY Protein kinase-like (PK-like) 3 268 IPR011009 -
Seca5g02464 339 FunFam Aurora kinase A 1 84 - -
Seca5g02464 339 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02464 339 FunFam Serine/threonine-protein kinase SRK2E 81 269 - -
Seca5g02464 339 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Seca5g02464 339 Gene3D Transferase(Phosphotransferase) domain 1 81 268 - -
Seca5g02464 339 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02464 339 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g02464 339 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Seca5g02464 339 CDD STKc_SnRK2 4 260 - -
Seca5g02464 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g02464 Seca-Chr5 68712412 68715867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g02464 4 271 CBL-interacting serine-threonine protein kinases AT4G24400 43.682 6.40e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca5g02464 Pkinase 5.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g02464 K14498 - gmx:100807981 574.318